greeshma1987/dyconnmap

A dynamic connectome mapping module in python.

dyconnmap

A neuroimaging module for dynamic connectome mapping.

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dyconnmap (abbreviated from “dynamic connectome mapping”), a neuroimaging python module specifically designed for estimating the dynamic connectivity and analyzing complex brain networks; from neurophysiological data such as electroencephalogram (EEG), magnetoencephalography (MEG) and functional magnetic resonance imaging (fMRI) recordings. It includes numerous submodules to work with, such as chronnectomics and graph-theoretical algorithms, (symbolic) time series and statistical methods.

This is an ongoing effort to develop the module further and extend it by adding more algorithms related to graph analysis and statistical approaches. Considering the increasing acceptance and usage of python in analyzing neuroimaging data, we firmly believe that the module will be a great addition in every practitioner's toolbox engaged in brain connectivity analysis.

Built on NumPy, SciPy, matplotlib and networkx.

Workflow outline

Publications

• Marimpis, A. D., Dimitriadis, S. I., & Goebel, R. (2021). Dyconnmap: Dynamic connectome mapping—A neuroimaging python module. Human Brain Mapping, 1– 31. https://doi.org/10.1002/hbm.25589

• poster presented @ 13th International Conference for Cognitive Neuroscience in Amsterdam (ICON2017) [under the previous name "dyfunconn"]

Resources

• Installation

• API Documentation

• Tutorials

• Examples

Citation

If you use dyconnmap or dyfunconn in a published work, please consider citing.

1.	Marimpis, A. D., Dimitriadis, S. I., & Goebel, R. (2021). Dyconnmap: Dynamic connectome mapping—A neuroimaging python module. Human Brain Mapping, 42( 15), 4909– 4939. https://doi.org/10.1002/hbm.25589
2.	Marimpis, A. D., & Dimitriadis, S. I. (2017). dyfunncon: dynamic functional connectivity–a neuroimaging Python module. F1000Research, 6. https://doi.org/10.7490/f1000research.1114652.1

Sponsors

Nov 2017 - Apr 2021	Brain Innovation B.V.
Sept 2017	BRAINTRAIN (Taking imaging into the therapeutic domain: Self-regulation of brain systems for mental disorders) research project (FP7-HEALTH).