Comments (1)
Hi @jon4thin
The original lolliplot()
function had to be removed due to a package dependency issue. I did re-write the function which is now called Lolliplot()
as you noticed. Both function pull from biomart for protein domains. It appears however that the mirror sites for ensembl have changed without me noticing.
To fix this please try altering the host param.
object <- Lolliplot(dataset.mode1, transcript="ENST00000263967",
species="hsapiens", txdb=txdb, BSgenome=BSgenome, host="https://useast.ensembl.org")
That should resolve the issue you are having. I'll update the default host in the next release.
from genvisr.
Related Issues (20)
- Cumulative CNV plot
- including not mutated samples HOT 1
- cnSpec/CNFreq
- Error creating Waterfall plot
- Ordering Mutational Data by mutburden from high to low within each clinical data (subplot) cohort HOT 5
- Warning: Error in lolliplot_qual: Detected more than 1 transcript in input to x
- package failing in bioc 3.14
- waterfall-when using sampOrder, some samples were not detected
- Using cnFreq with .seg files HOT 2
- waterfall plot "plotMutBurden" function HOT 1
- Split waterfall result plot based on clinical parameter
- Error in geneViz_formatUTR when no UTRs HOT 1
- Error downloading and reading the library (No package called FField) HOT 16
- change the Y-axis scale in cnView plot
- FField dependency is deprecated HOT 2
- install GenVisr HOT 1
- VEP version 108 support
- unable to install GenVisR HOT 1
- Error in heatmap_grob[["grobs"]][[ind_legend]] : no such index at level 2 HOT 7
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from genvisr.