I am a hardworking peacefull human being. Building Software ๐พ
For more information about me - visit gromdimon.github.io
Design of NN model for brain 3D images segmentation.
License: MIT License
I am a hardworking peacefull human being. Building Software ๐พ
For more information about me - visit gromdimon.github.io
Is your feature request related to a problem? Please describe.
It'll be useful to have a doc, which specifies how to work with GH to make more fun, then pain.
Describe the solution you'd like
Create this doc
Describe alternatives you've considered
N/A
Additional context
N/A
Is your feature request related to a problem? Please describe.
We should investigate UNETR Architecture as described in one of our doc.
Describe the solution you'd like
Investigate UNETR architecture:
Describe alternatives you've considered
N/A
Additional context
We first need a consisten data loader, so @gromdimon should create it soon.
Check docs/optimizations.md
Is your feature request related to a problem? Please describe.
We should use weights and biases for tracking results of model training.
Describe the solution you'd like
src/utils.py
for setting up W&B tracking in jupyter notebooknotebooks/UNet.ipynb
with help of the created helper functionDescribe alternatives you've considered
N/A
Additional context
Useful links:
Example setup in python: https://docs.wandb.ai/quickstart
Tutorial: https://markjcarlebach.medium.com/getting-started-with-weights-and-biases-19450c33a4ed
Is your feature request related to a problem? Please describe.
Add UNETR characteristics in related doc.
Describe the solution you'd like
N/A
Describe alternatives you've considered
N/A
Additional context
N/A
Is your feature request related to a problem? Please describe.
Create a notebook for training UNet
Describe the solution you'd like
N/A
Describe alternatives you've considered
N/A
Additional context
N/A
Is your feature request related to a problem? Please describe.
We should investigate U-Net Architecture as described in one of our doc.
Describe the solution you'd like
Investigate U-Net architecture:
Describe alternatives you've considered
N/A
Additional context
We first need a consisten data loader, so @gromdimon should create it soon.
Check docs/optimizations.md
Check docs/optimizations.md
Check docs/optimizations.md
Describe the bug
environment.yml is not functional as of right now on SSH
To Reproduce
Steps to reproduce the behavior:
Expected behavior
The right packages are downloaded and the new Conda environment is created.
Actual behavior
Either it will report the following packages as not found:
ResolvePackageNotFound:
- torchaudio
- ignite
Or, if we exclude the invalid packages, it will remain on
Solving environment: |
Until terminated.
Is your feature request related to a problem? Please describe.
Sometimes it's not just about the beauty of code, but a general beauty. So, we should make our Readme attractive enough.
Describe the solution you'd like
Update the Readme. Inspiration can be found e.g. in
Describe alternatives you've considered
Create a documentation and deploy it separately. But that's more difficult and not needed
Additional context
N/A
Is your feature request related to a problem? Please describe.
As adressed in issues #3, #4, #5 we need a consistent unified data loader to make the results comparable.
Describe the solution you'd like
Create a python file for data loading + data splitting.
Describe alternatives you've considered
N/A
Additional context
Look at MONAI tutorials
Is your feature request related to a problem? Please describe.
We should investigate ResNet Architecture as described in one of our doc.
Describe the solution you'd like
Investigate ResNet architecture:
Describe alternatives you've considered
N/A
Additional context
We first need a consisten data loader, so @gromdimon should create it soon.
Check docs/optimizations.md
Check docs/optimizations.md
Check docs/optimizations.md
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