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Convert HL7 to FHIR, CDA to FHIR, FHIR to HL7 as a Service

License: MIT License

ObjectScript 100.00%
fhir hl7 cda hl7v2 hl7v2-fhir-converter fhir-converter hl7v2-transformation ccda ccdaparsing

iris-healthtoolkit-service's Introduction

Iris Healthtoolkit Service

Video

Easy to use HL7v2 to FHIR, CDA to FHIR, FHIR to HL7v2 as a Service.

The aim of this project is to provide an REST API that can convert easily various health formats. Post the desire format in the REST body, get the answer in the new format.

Install

Clone this repository

git clone https://github.com/grongierisc/iris-healthtoolkit-service.git

Docker

docker-compose up --build -d

Usage

Api details

HL7 to FHIR

POST http://localhost:32783/api/hl7/fhir

Example

Input 
MSH|^~\&||^^NPI|||20211105165829+0000||ADT^A01|66053,61109.396628|P|2.5.1|||AL|AL|||||PH_SS-Ack^SS Sender^2.16.840.1.114222.4.10.3^ISO
EVN||202111051658|||||^^NPI
PID|1||060a6bd5-5146-4b08-a916-009858997bd3^^^https://github.com/synthetichealth/synthea^~060a6bd5-5146-4b08-a916-009858997bd3^^^http://hospital.smarthealthit.org^MR~999-97-4582^^^&^SS~S99986284^^^&^DL~X84330364X^^^&^PPN||Masson^Livia^^^Mrs.^^||19920820|F|Simon^Livia^^||615 Avenue Lemaire^^Lyon^Auvergne-Rhone-Alpes^63000||^PRN^PH^^^555^286|||||||||||||||||||||
PV1|1|O||424441002|||||||||||||||1^^^&&^VN|||||||||||||||||||||||||200812312325|20090101044004
PV2|||72892002^Grossesse normale^SCT
OBX|1||8302-2^Taille du corps^LN||20101014002504^^|cm^^UCUM|||||F|||20101014
OBX|2||72514-3^Gravite de la douleur - 0-10 evaluation numerique verbale [Score] - Signaleee^LN||20101014002504^^|{score}^^UCUM|||||F|||20101014
OBX|3||29463-7^Poids corporel^LN||20101014002504^^|kg^^UCUM|||||F|||20101014
OBX|4||39156-5^Indice de masse corporelle^LN||20101014002504^^|kg/m2^^UCUM|||||F|||20101014
OBX|5||72166-2^Statut du tabagisme^LN||20171026002504^Ancien fumeur^SCT^^^^^^Ancien fumeur||||||F|||20171026
Output 
{
"resourceType": "Bundle",
"type": "transaction",
"entry": [
  {
    "request": {
      "method": "POST",
      "url": "Organization"
    },
    "fullUrl": "urn:uuid:347a0c88-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Organization",
      "identifier": [
        {
          "value": "https://github.com/synthetichealth/synthea"
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Organization"
    },
    "fullUrl": "urn:uuid:34d03d1a-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Organization",
      "identifier": [
        {
          "value": "http://hospital.smarthealthit.org"
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Patient"
    },
    "fullUrl": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Patient",
      "address": [
        {
          "city": "Lyon",
          "line": [
            "615 Avenue Lemaire"
          ],
          "postalCode": "63000",
          "state": "Auvergne-Rhone-Alpes"
        }
      ],
      "birthDate": "1992-08-20",
      "gender": "female",
      "identifier": [
        {
          "assigner": {
            "reference": "urn:uuid:347a0c88-e7fa-11ec-9601-0242ac1a0002"
          },
          "system": "https://github.com/synthetichealth/synthea",
          "value": "060a6bd5-5146-4b08-a916-009858997bd3"
        },
        {
          "assigner": {
            "reference": "urn:uuid:34d03d1a-e7fa-11ec-9601-0242ac1a0002"
          },
          "system": "http://hospital.smarthealthit.org",
          "type": {
            "coding": [
              {
                "code": "MR",
                "system": "http://terminology.hl7.org/CodeSystem/v2-0203"
              }
            ],
            "text": "MRN"
          },
          "value": "060a6bd5-5146-4b08-a916-009858997bd3"
        },
        {
          "extension": [
            {
              "url": "http://intersystems.com/fhir/extn/sda3/lib/patient-number-i-s-o-assigning-authority",
              "valueString": "&"
            }
          ],
          "type": {
            "coding": [
              {
                "code": "SS"
              }
            ],
            "text": "SS"
          },
          "value": "999-97-4582"
        },
        {
          "extension": [
            {
              "url": "http://intersystems.com/fhir/extn/sda3/lib/patient-number-i-s-o-assigning-authority",
              "valueString": "&"
            }
          ],
          "type": {
            "coding": [
              {
                "code": "DL",
                "system": "http://terminology.hl7.org/CodeSystem/v2-0203"
              }
            ],
            "text": "DL"
          },
          "value": "S99986284"
        },
        {
          "extension": [
            {
              "url": "http://intersystems.com/fhir/extn/sda3/lib/patient-number-i-s-o-assigning-authority",
              "valueString": "&"
            }
          ],
          "type": {
            "coding": [
              {
                "code": "PPN",
                "system": "http://terminology.hl7.org/CodeSystem/v2-0203"
              }
            ],
            "text": "PPN"
          },
          "value": "X84330364X"
        }
      ],
      "name": [
        {
          "family": "Simon",
          "given": [
            "Livia"
          ],
          "text": "Livia Simon"
        },
        {
          "family": "Masson",
          "given": [
            "Livia"
          ],
          "prefix": [
            "Mrs."
          ],
          "text": "Mrs. Livia Masson",
          "use": "official"
        }
      ],
      "telecom": [
        {
          "system": "phone",
          "use": "home",
          "value": "(555) 286"
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Encounter"
    },
    "fullUrl": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Encounter",
      "class": {
        "code": "AMB",
        "system": "http://terminology.hl7.org/CodeSystem/v3-ActCode"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/encounter-encounter-type",
          "valueString": "O"
        },
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/encounter-entered-on",
          "valueDateTime": "2008-12-31T23:25:00+00:00"
        },
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/encounter-to-time",
          "valueDateTime": "2009-01-01T04:40:04+00:00"
        }
      ],
      "identifier": [
        {
          "type": {
            "text": "EncounterNumber"
          },
          "use": "official",
          "value": "1"
        }
      ],
      "period": {
        "start": "2008-12-31T23:25:00+00:00"
      },
      "reasonCode": [
        {
          "coding": [
            {
              "code": "72892002",
              "display": "Grossesse normale",
              "system": "http://snomed.info/sct"
            }
          ]
        }
      ],
      "status": "unknown",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "type": [
        {
          "coding": [
            {
              "code": "424441002"
            }
          ]
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3a13745e-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "code": {
        "coding": [
          {
            "code": "72166-2",
            "display": "Statut du tabagisme",
            "system": "http://loinc.org"
          }
        ]
      },
      "effectiveDateTime": "2017-10-26T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        },
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-observation-coded-value",
          "valueCodeableConcept": {
            "coding": [
              {
                "code": "20171026002504",
                "display": "Ancien fumeur",
                "system": "http://snomed.info/sct"
              }
            ],
            "text": "Ancien fumeur"
          }
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueString": "Ancien fumeur"
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3b6212fc-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "category": [
        {
          "coding": [
            {
              "code": "vital-signs",
              "display": "Vital Signs",
              "system": "http://terminology.hl7.org/CodeSystem/observation-category"
            }
          ],
          "text": "Vital Signs"
        }
      ],
      "code": {
        "coding": [
          {
            "code": "8302-2",
            "display": "Taille du corps",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "cm",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3c8aba30-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "code": {
        "coding": [
          {
            "code": "72514-3",
            "display": "Gravite de la douleur - 0-10 evaluation numerique verbale [Score] - Signaleee",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "{score}",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3de455d0-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "category": [
        {
          "coding": [
            {
              "code": "vital-signs",
              "display": "Vital Signs",
              "system": "http://terminology.hl7.org/CodeSystem/observation-category"
            }
          ],
          "text": "Vital Signs"
        }
      ],
      "code": {
        "coding": [
          {
            "code": "29463-7",
            "display": "Poids corporel",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "kg",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3f501418-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "code": {
        "coding": [
          {
            "code": "39156-5",
            "display": "Indice de masse corporelle",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "kg/m2",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  }
]
}

FHIR to HL7 ADT

POST http://localhost:32783/api/fhir/hl7/adt

Example

Input 
{
"resourceType": "Bundle",
"type": "transaction",
"entry": [
  {
    "request": {
      "method": "POST",
      "url": "Organization"
    },
    "fullUrl": "urn:uuid:347a0c88-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Organization",
      "identifier": [
        {
          "value": "https://github.com/synthetichealth/synthea"
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Organization"
    },
    "fullUrl": "urn:uuid:34d03d1a-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Organization",
      "identifier": [
        {
          "value": "http://hospital.smarthealthit.org"
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Patient"
    },
    "fullUrl": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Patient",
      "address": [
        {
          "city": "Lyon",
          "line": [
            "615 Avenue Lemaire"
          ],
          "postalCode": "63000",
          "state": "Auvergne-Rhone-Alpes"
        }
      ],
      "birthDate": "1992-08-20",
      "gender": "female",
      "identifier": [
        {
          "assigner": {
            "reference": "urn:uuid:347a0c88-e7fa-11ec-9601-0242ac1a0002"
          },
          "system": "https://github.com/synthetichealth/synthea",
          "value": "060a6bd5-5146-4b08-a916-009858997bd3"
        },
        {
          "assigner": {
            "reference": "urn:uuid:34d03d1a-e7fa-11ec-9601-0242ac1a0002"
          },
          "system": "http://hospital.smarthealthit.org",
          "type": {
            "coding": [
              {
                "code": "MR",
                "system": "http://terminology.hl7.org/CodeSystem/v2-0203"
              }
            ],
            "text": "MRN"
          },
          "value": "060a6bd5-5146-4b08-a916-009858997bd3"
        },
        {
          "extension": [
            {
              "url": "http://intersystems.com/fhir/extn/sda3/lib/patient-number-i-s-o-assigning-authority",
              "valueString": "&"
            }
          ],
          "type": {
            "coding": [
              {
                "code": "SS"
              }
            ],
            "text": "SS"
          },
          "value": "999-97-4582"
        },
        {
          "extension": [
            {
              "url": "http://intersystems.com/fhir/extn/sda3/lib/patient-number-i-s-o-assigning-authority",
              "valueString": "&"
            }
          ],
          "type": {
            "coding": [
              {
                "code": "DL",
                "system": "http://terminology.hl7.org/CodeSystem/v2-0203"
              }
            ],
            "text": "DL"
          },
          "value": "S99986284"
        },
        {
          "extension": [
            {
              "url": "http://intersystems.com/fhir/extn/sda3/lib/patient-number-i-s-o-assigning-authority",
              "valueString": "&"
            }
          ],
          "type": {
            "coding": [
              {
                "code": "PPN",
                "system": "http://terminology.hl7.org/CodeSystem/v2-0203"
              }
            ],
            "text": "PPN"
          },
          "value": "X84330364X"
        }
      ],
      "name": [
        {
          "family": "Simon",
          "given": [
            "Livia"
          ],
          "text": "Livia Simon"
        },
        {
          "family": "Masson",
          "given": [
            "Livia"
          ],
          "prefix": [
            "Mrs."
          ],
          "text": "Mrs. Livia Masson",
          "use": "official"
        }
      ],
      "telecom": [
        {
          "system": "phone",
          "use": "home",
          "value": "(555) 286"
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Encounter"
    },
    "fullUrl": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Encounter",
      "class": {
        "code": "AMB",
        "system": "http://terminology.hl7.org/CodeSystem/v3-ActCode"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/encounter-encounter-type",
          "valueString": "O"
        },
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/encounter-entered-on",
          "valueDateTime": "2008-12-31T23:25:00+00:00"
        },
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/encounter-to-time",
          "valueDateTime": "2009-01-01T04:40:04+00:00"
        }
      ],
      "identifier": [
        {
          "type": {
            "text": "EncounterNumber"
          },
          "use": "official",
          "value": "1"
        }
      ],
      "period": {
        "start": "2008-12-31T23:25:00+00:00"
      },
      "reasonCode": [
        {
          "coding": [
            {
              "code": "72892002",
              "display": "Grossesse normale",
              "system": "http://snomed.info/sct"
            }
          ]
        }
      ],
      "status": "unknown",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "type": [
        {
          "coding": [
            {
              "code": "424441002"
            }
          ]
        }
      ]
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3a13745e-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "code": {
        "coding": [
          {
            "code": "72166-2",
            "display": "Statut du tabagisme",
            "system": "http://loinc.org"
          }
        ]
      },
      "effectiveDateTime": "2017-10-26T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        },
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-observation-coded-value",
          "valueCodeableConcept": {
            "coding": [
              {
                "code": "20171026002504",
                "display": "Ancien fumeur",
                "system": "http://snomed.info/sct"
              }
            ],
            "text": "Ancien fumeur"
          }
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueString": "Ancien fumeur"
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3b6212fc-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "category": [
        {
          "coding": [
            {
              "code": "vital-signs",
              "display": "Vital Signs",
              "system": "http://terminology.hl7.org/CodeSystem/observation-category"
            }
          ],
          "text": "Vital Signs"
        }
      ],
      "code": {
        "coding": [
          {
            "code": "8302-2",
            "display": "Taille du corps",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "cm",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3c8aba30-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "code": {
        "coding": [
          {
            "code": "72514-3",
            "display": "Gravite de la douleur - 0-10 evaluation numerique verbale [Score] - Signaleee",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "{score}",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3de455d0-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "category": [
        {
          "coding": [
            {
              "code": "vital-signs",
              "display": "Vital Signs",
              "system": "http://terminology.hl7.org/CodeSystem/observation-category"
            }
          ],
          "text": "Vital Signs"
        }
      ],
      "code": {
        "coding": [
          {
            "code": "29463-7",
            "display": "Poids corporel",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "kg",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  },
  {
    "request": {
      "method": "POST",
      "url": "Observation"
    },
    "fullUrl": "urn:uuid:3f501418-e7fa-11ec-9601-0242ac1a0002",
    "resource": {
      "resourceType": "Observation",
      "code": {
        "coding": [
          {
            "code": "39156-5",
            "display": "Indice de masse corporelle",
            "system": "http://loinc.org"
          }
        ],
        "extension": [
          {
            "url": "http://intersystems.com/fhir/extn/sda3/lib/code-table-detail-observation-observation-value-units",
            "valueCodeableConcept": {
              "coding": [
                {
                  "code": "kg/m2",
                  "system": "http://unitsofmeasure.org"
                }
              ]
            }
          }
        ]
      },
      "effectiveDateTime": "2010-10-14T00:00:00+00:00",
      "encounter": {
        "reference": "urn:uuid:38cf2d40-e7fa-11ec-9601-0242ac1a0002"
      },
      "extension": [
        {
          "url": "http://intersystems.com/fhir/extn/sda3/lib/observation-encounter-number",
          "valueString": "1"
        }
      ],
      "status": "final",
      "subject": {
        "reference": "urn:uuid:36dd6e2a-e7fa-11ec-9601-0242ac1a0002"
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "20101014002504"
          }
        ]
      }
    }
  }
]
}
Output 
MSH|^~\&||^^NPI|||20220609134903+0000||^|66269,49743.388133779|P|2.5.1|||AL|AL|||||PH_SS-Ack^SS Sender^2.16.840.1.114222.4.10.3^ISO
EVN||202206091349|||||^^NPI
PID|1||060a6bd5-5146-4b08-a916-009858997bd3^^^https://github.com/s&&ISO^~060a6bd5-5146-4b08-a916-009858997bd3^^^http://hospital.smar&&ISO^MR~999-97-4582^^^&^SS~S99986284^^^&^DL~X84330364X^^^&^PPN||Masson^Livia^^^Mrs.^^||19920820|F|Simon^Livia^^||615 Avenue Lemaire^^^^||^PRN^PH^^^555^286|||||||||||||||||||||
PV1|1|O||424441002|||||||||||||||1^^^&&^VN|||||||||||||||||||||||||200812312325|
PV2|||72892002^Grossesse normale^SCT
OBX|1||72166-2^Statut du tabagisme^LN||^^||||||F|||20171026
OBX|2||8302-2^Taille du corps^LN||^^||||||F|||20101014
OBX|3||72514-3^Gravite de la douleur - 0-10 evaluation numerique verbale [Score] - Signaleee^LN||^^||||||F|||20101014
OBX|4||29463-7^Poids corporel^LN||^^||||||F|||20101014
OBX|5||39156-5^Indice de masse corporelle^LN||^^||||||F|||20101014

FHIR to HL7 ORU

POST http://localhost:32783/api/fhir/hl7/oru

FHIR to HL7 vxu

POST http://localhost:32783/api/fhir/hl7/vxu

CDA to FHIR

POST http://localhost:32783/api/cda/fhir

Example

Input 





  Output







FHIR repo


GET http://localhost:32783/api/fhir/metadata



Supported HL7 inbound format :


    

  • 

    ADT_A01, ADT_A02, ADT_A03, ADT_A04, ADT_A05, ADT_A06, ADT_A07, ADT_A08, ADT_A09, ADT_A10, ADT_A11, ADT_A12, ADT_A13, ADT_A17, ADT_A18, ADT_A23, ADT_A25, ADT_A27, ADT_A28, ADT_A29, ADT_A30, ADT_A31, ADT_A34, ADT_A36, ADT_A39, ADT_A40, ADT_A41, ADT_A45, ADT_A47, ADT_A49, ADT_A50, ADT_A51, ADT_A60
    

    • 

  • 

    BAR_P12
    

    • 

  • 

    MDM_T02, MDM_T04, MDM_T08, MDM_T11
    

    • 

  • 

    OMP_O09
    

    • 

  • 

    ORM_O01
    

    • 

  • 

    ORU_R01
    

    • 

  • 

    PPR_PC1, PPR_PC2, PPR_PC3
    

    • 

  • 

    RDE_O11
    

    • 

  • 

    SIU_S12, SIU_S13, SIU_S14, SIU_S15, SIU_S16, SIU_S17, SIU_S26
    

    • 

  • 

    VXU_V04
    

    • 



How it's working


This project works with the pivot diagram: SDA.


The SDA (Summary Document Architecture) is the InterSystems Clinical Data Format.


The SDA <-> FHIR correspondences can be consulted here, and those of the CDA -> SDA here.


gif sda pivot



    

  





    
    
  




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iris-healthtoolkit-service's Issues

  
    

    
 
      

        Error on startup due to too many CPU cores
      

      
Hi, thank you for your amazing tools.

I searched extensively for a program to convert FHIR to HL7 and found that this repository is the only one available.


However, I tried to run through docker, but got this error message.


 > [iris builder 6/8] RUN iris start IRIS       && iris session IRIS < /tmp/iris.script         && iris stop IRIS quietly:                                                                                                                                                               
0.236 Using 'iris.cpf' configuration file                                                                                                                                                                                                                                                
0.396                                                                                                                                                                                                                                                                                    
0.789 Starting Control Process                                                                                                                                                                                                                                                           
0.789 Global buffer setting requires attention.  Auto-selected 25% of total memory.                                                                                                                                                                                                      
0.789 Allocated 71495MB shared memory
0.789 64387MB global buffers, 300MB routine buffers
3.952 This copy of InterSystems IRIS has been licensed for use exclusively by:
3.952 Too many Cores (32) for InterSystems IRIS Community License.
3.952 Copyright (c) 1986-2023 by InterSystems Corporation
3.952 Any other use is a violation of your license agreement
5.591 
5.591 Error: Invalid Community Edition license, may have exceeded core limit. - Shutting down the system : $zu(56,2)= 0Starting IRIS
14.11 
14.11 An error was detected during InterSystems IRIS startup.
14.11 ** Startup aborted **



I think this happens because I have too much cpu cores (32).

How can I run this tool with less cpu cores? I tried to edit docker-compose.yml, but the same error messages occurred.


Thank you again for your efforts!

    

  






        

          

          

            
            
            

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