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bio

bioconda-recipes

Conda recipes for the bioconda channel.

damage-estimator

echo_kernel

A simple example kernel for Jupyter

fastai

The fastai deep learning library, plus lessons and tutorials

gshiba.github.io

jupyter-notebook-extension

jupyter_contrib_nbextensions

A collection of various notebook extensions for Jupyter

kuku81

more-itertools

More routines for operating on iterables, beyond itertools

ogel

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

papermill

📚 Parameterize, execute, and analyze notebooks

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

pytest-mpl

A pytest plugin to faciliate image comparison for Matplotlib figures

qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

qpython

interprocess communication between Python and kdb+

rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

samcut

samcut is cut for sam. Get the cigar and MD columns easily: `samtools view in.bam | samcut cigar MD`.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

strata-mpl-tutorial

typeshed

Collection of library stubs for Python, with static types

umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

vim-colorschemes

one colorscheme pack to rule them all!

vim-indent-rainbow

vim-valign

vizz

youtube

youtube files for videos