gszep/flowworkspace.jl

Load useful metadata from FlowJo workspace files such as gating strategies and sample groups

flowworkspace.jl's Issues

both FlowWorkspace and FileIO export "load"

we would like to hook into the common load interface through JuliaIO

support logicle transforms

support curlyQuad and EllipsoidGates

support threshold gates

group labels are not being parsed correctly

we cannot trust groups or labels when multiple files are being loaded.. something odd is happening..

data, labels, groups, gating = load( files)

apply flowjo compensation matrices

The workspace file has transform::spillovermatrix tags that need to be parsed and applied to the data. Doing this will allow users to use flowjos compensation methods. While the returned data does have acquisition time compensation applied to it, FlowJo compensation is not

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ERROR: MethodError: no method matching replace(::String, ::String)

bug found on src/Gating.jl:21

register package

@JuliaRegistrator register

support quadgates

expose column kwarg in append!

allow non-unique file names; match metadata based on unique file paths

The issue is cross-platform compatibility. FlowJo stores the absolute path that contains os user specific information that we do not want to parse. I currently use basename(path) to uniquely identify the sample in the .wsp file, but this is not general. How do I truncate path to the relative path of the .fcs file from the .wsp file?

%20 strikes again

bloody spaces ruining everything for everyone; spaces in filenames should be illegal