Comments (1)
Running the docker image (via singularity because that's all I have) worked for me, though.
git clone https://github.com/guigolab/ggsashimi.git
cd ggsashimi/examples
singularity pull docker://guigolab/ggsashimi
singularity run -B $PWD:/mnt/ ggsashimi.simg -b /mnt/input_bams.tsv -c chr10:27040584-27048100 -g /mnt/annotation.gtf -M 10 -C 3 -O 3 --shrink --alpha 0.25 --base-size=20 --ann-height=4 --height=3 --width=18 -P /mnt/palette.txt
So, evidently this is an environment issue on my end...
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Related Issues (20)
- Support for CIGAR strings containing `X` and `=` ops HOT 1
- Coordinates of splicing events HOT 2
- ValueError: invalid contig `chr1` HOT 3
- Remove number of reads HOT 1
- Read counts (y-axis) HOT 2
- No density plots HOT 1
- invalid contig issue HOT 2
- Error in R HOT 2
- Error running docker latest docker image (v.1.1.0) HOT 2
- error regarding intersect_introns HOT 17
- IndexError: list index out of range HOT 3
- C stack usage error HOT 3
- Error in FUN(X[[i]], ...) : object 'V1' not found HOT 2
- Individual exon junction cut-off
- Duplicate coverage output HOT 3
- Program hangs / freezes HOT 2
- Help with example HOT 1
- Output PDF HOT 2
- So many junctions and intron-like gaps HOT 2
- Colors not working HOT 2
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