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aav

Scripts for analyzing PacBio AAV sequences

ailearning

AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

ampseq

Computational analysis of AmpSeq data for targeted comparative genomics

artificialfastqgenerator

Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.

awesome-alternative-splicing

Alternative splicing resource

bam-readcount

Count bases in BAM/CRAM files

bioinformatic

Some small scripts，help yourself~

camelot

Camelot: PDF Table Extraction for Humans

centrifuge

Classifier for metagenomic sequences

cnvkit

Copy number variant detection from targeted DNA sequencing

cufflinks

Productivity Tools for Plotly + Pandas

decon

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

excalibur

A web interface to extract tabular data from PDFs

expansionhunter

A tool for estimating repeat sizes

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fraser-analysis

Accompanying analysis code for the FRASER manuscript

fvc

gatk

Official code repository for GATK versions 4 and up

gnomad_mnv

Multi-nucleotide variants (MNVs) in gnomAD 2.1

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

hail

Scalable genomic data analysis.

ice

Synthego ICE - Inference of CRISPR Editing software

img

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

lihang-code

《统计学习方法》的代码实现

longqc

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

ml-nlp

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。