hackerfriendly/actg

ACTG: Nucleotide syntax highlighting

actg's Issues

Syntax coloring for individual file formats

Hey this is a really cool sublime package btw! Thank you for it!

I was wondering firstly where the actual colors are declared for each nucleotide.

Mostly though, I was hoping for more distinction of file formats. For instance in VCF files, I was hoping that the meta lines for instance would not have syntax coloring for nucleotides, but actually for the key-pair values. Do you think that is something that could be implemented?

Once again, thank you for how it is already.
-Alex

Does reverse complement per line -- should do per block

I pased a sequence that had line breaks, then did a reverse complement. It reverse complemented each of the lines individually.

Here's my sequence:

TGGAAGAGCAGGCTGGGGTCGGCAGGATGGTGTGAGGACAGCTTTCCAGG
AATGAGAGTTAAGAATGACATCTCTGAGTGCCAAGGTGCCACAGGGCATT
AGAAGAATAGACATGAGCACTTATTTTCTGCTTAACAGGTGGAGACAGAC
TCAGAACAATAGACAGCGTCCCTGTCCTTACCAAGGGAAGGTCGTGATCT
CAAGGAGACAGCAGCTAATGTCATCTCAGAGGACAAGAAGTGTTAAAGAG
AAAACAGACCAGGAAGGAAAGCATTTGGGGGGGGGGGCAGTGATTCTCAG
CAAGGTGGAGGTGACTTTGGAGCAGAACTAGGAGAGGGTGTGTTTCCTCT
TCCTGACAACCAGTCTCTACCTATCTCTTGGGACCAAGGTCACAGTGTTG
CCACCAATTAATTCCTCCAAGACAACAGGTTCCACCTTTTAGCCTGGAGC
TTTCAGAAAGATGAGGCCACTCCTCCCTCCTCAACTCCCAAATTGGGGTG
TATATTAATGGAGGAAGGGAGGAGCAAGGCAGACCCCCATCTTTTCTAGG
AAGGAGCTAGTAGGACCCAGGAATCAAGCTGCCCAGTCCCAGCCCTAGCC
CGATGGTGACAAGGGCCCCTTTGTGCCCCCCTCCCCCGGGGGCAGGGAGG
AGCTGGGCCCTGGAGGCAGGCGGCCCCTGGCACCCAGGGGGCAGAGGAGG
GGCTGGCAAGTGGGGGCCTAGACCCTGGGAGCCCAAGGGACTGTAAGCCC
GGCCAGCCGAGCAGAAGGTGCAGAAGTCAGATCGTCCA

Here's what the extension gave me as a reverse complement:

CCTGGAAAGCTGTCCTCACACCATCCTGCCGACCCCAGCCTGCTCTTCCA
AATGCCCTGTGGCACCTTGGCACTCAGAGATGTCATTCTTAACTCTCATT
GTCTGTCTCCACCTGTTAAGCAGAAAATAAGTGCTCATGTCTATTCTTCT
AGATCACGACCTTCCCTTGGTAAGGACAGGGACGCTGTCTATTGTTCTGA
CTCTTTAACACTTCTTGTCCTCTGAGATGACATTAGCTGCTGTCTCCTTG
CTGAGAATCACTGCCCCCCCCCCCAAATGCTTTCCTTCCTGGTCTGTTTT
AGAGGAAACACACCCTCTCCTAGTTCTGCTCCAAAGTCACCTCCACCTTG
CAACACTGTGACCTTGGTCCCAAGAGATAGGTAGAGACTGGTTGTCAGGA
GCTCCAGGCTAAAAGGTGGAACCTGTTGTCTTGGAGGAATTAATTGGTGG
CACCCCAATTTGGGAGTTGAGGAGGGAGGAGTGGCCTCATCTTTCTGAAA
CCTAGAAAAGATGGGGGTCTGCCTTGCTCCTCCCTTCCTCCATTAATATA
GGCTAGGGCTGGGACTGGGCAGCTTGATTCCTGGGTCCTACTAGCTCCTT
CCTCCCTGCCCCCGGGGGAGGGGGGCACAAAGGGGCCCTTGTCACCATCG
CCTCCTCTGCCCCCTGGGTGCCAGGGGCCGCCTGCCTCCAGGGCCCAGCT
GGGCTTACAGTCCCTTGGGCTCCCAGGGTCTAGGCCCCCACTTGCCAGCC
TGGACGATCTGACTTCTGCACCTTCTGCTCGGCTGGCC

Here's the correct reverse complement (from an online tool):

TGGACGATCTGACTTCTGCACCTTCTGCTCGGCTGGCC
GGGCTTACAGTCCCTTGGGCTCCCAGGGTCTAGGCCCCCACTTGCCAGCC
CCTCCTCTGCCCCCTGGGTGCCAGGGGCCGCCTGCCTCCAGGGCCCAGCT
CCTCCCTGCCCCCGGGGGAGGGGGGCACAAAGGGGCCCTTGTCACCATCG
GGCTAGGGCTGGGACTGGGCAGCTTGATTCCTGGGTCCTACTAGCTCCTT
CCTAGAAAAGATGGGGGTCTGCCTTGCTCCTCCCTTCCTCCATTAATATA
CACCCCAATTTGGGAGTTGAGGAGGGAGGAGTGGCCTCATCTTTCTGAAA
GCTCCAGGCTAAAAGGTGGAACCTGTTGTCTTGGAGGAATTAATTGGTGG
CAACACTGTGACCTTGGTCCCAAGAGATAGGTAGAGACTGGTTGTCAGGA
AGAGGAAACACACCCTCTCCTAGTTCTGCTCCAAAGTCACCTCCACCTTG
CTGAGAATCACTGCCCCCCCCCCCAAATGCTTTCCTTCCTGGTCTGTTTT
CTCTTTAACACTTCTTGTCCTCTGAGATGACATTAGCTGCTGTCTCCTTG
AGATCACGACCTTCCCTTGGTAAGGACAGGGACGCTGTCTATTGTTCTGA
GTCTGTCTCCACCTGTTAAGCAGAAAATAAGTGCTCATGTCTATTCTTCT
AATGCCCTGTGGCACCTTGGCACTCAGAGATGTCATTCTTAACTCTCATT
CCTGGAAAGCTGTCCTCACACCATCCTGCCGACCCCAGCCTGCTCTTCCA