hadim/mm_scripts

A collection of scripts related to Micro-Manager.

Micro-Manager Scripts

A collection of scripts related to Micro-Manager.

Use it, hack it, share it.

License

Under BSD license. See LICENSE.

Authors

• Hadrien Mary [email protected]

mm_scripts's Issues

build script failed

Hi, im trying to use your build script as recommended here micro-manager/micro-manager#573 but it looks like it's failing during compilation. I also tried installing using ubuntu dependency for boost but that failed also. I'm on 18.04. Do you have any suggestions? Thanks!

here is the last part:

MMClearVolume.compile:
    [mkdir] Created dir: /home/couguser/Applications/mm_scripts/micro-manager/plugins/build/MMClearVolume
 [mm-javac] Compiling 14 source files to /home/couguser/Applications/mm_scripts/micro-manager/plugins/build/MMClearVolume
 [mm-javac] warning: [options] bootstrap class path not set in conjunction with -source 8
 [mm-javac] warning: Supported source version 'RELEASE_6' from annotation processor 'com.jogamp.gluegen.structgen.CStructAnnotationProcessor' less than -source '8'
 [mm-javac] warning: No processor claimed any of these annotations: org.scijava.plugin.Plugin,com.google.common.eventbus.Subscribe
 [mm-javac] /home/couguser/Applications/mm_scripts/micro-manager/plugins/MMClearVolumePlugin/src/main/java/edu/ucsf/valelab/mmclearvolumeplugin/CVViewer.java:24: error: package com.jogamp.newt.awt does not exist
 [mm-javac] import com.jogamp.newt.awt.NewtCanvasAWT;
 [mm-javac]                           ^
 [mm-javac] /home/couguser/Applications/mm_scripts/micro-manager/plugins/MMClearVolumePlugin/src/main/java/edu/ucsf/valelab/mmclearvolumeplugin/CVViewer.java:28: error: package com.jogamp.newt does not exist
 [mm-javac] import com.jogamp.newt.NewtFactory;
 [mm-javac]                       ^
 [mm-javac] /home/couguser/Applications/mm_scripts/micro-manager/plugins/MMClearVolumePlugin/src/main/java/edu/ucsf/valelab/mmclearvolumeplugin/recorder/CVVideoRecorder.java:5: error: package com.jogamp.opengl does not exist
 [mm-javac] import com.jogamp.opengl.GL;
 [mm-javac]                         ^
 [mm-javac] /home/couguser/Applications/mm_scripts/micro-manager/plugins/MMClearVolumePlugin/src/main/java/edu/ucsf/valelab/mmclearvolumeplugin/recorder/CVVideoRecorder.java:6: error: package com.jogamp.opengl does not exist
 [mm-javac] import com.jogamp.opengl.GLAutoDrawable;
 [mm-javac]                         ^
 [mm-javac] /home/couguser/Applications/mm_scripts/micro-manager/plugins/MMClearVolumePlugin/src/main/java/edu/ucsf/valelab/mmclearvolumeplugin/recorder/CVVideoRecorder.java:23: error: cannot find symbol
 [mm-javac]    public boolean screenshot(GLAutoDrawable pGLAutoDrawable,
 [mm-javac]                              ^
 [mm-javac]   symbol:   class GLAutoDrawable
 [mm-javac]   location: class CVVideoRecorder
 [mm-javac] /home/couguser/Applications/mm_scripts/micro-manager/plugins/MMClearVolumePlugin/src/main/java/edu/ucsf/valelab/mmclearvolumeplugin/recorder/CVSnapshot.java:5: error: package com.jogamp.opengl does not exist
 [mm-javac] import com.jogamp.opengl.GL;
 [mm-javac]                         ^
 [mm-javac] /home/couguser/Applications/mm_scripts/micro-manager/plugins/MMClearVolumePlugin/src/main/java/edu/ucsf/valelab/mmclearvolumeplugin/recorder/CVSnapshot.java:25: error: cannot find symbol
 [mm-javac]    public boolean screenshot(GLAutoDrawable pGLAutoDrawable,
 [mm-javac]                              ^
 [mm-javac]   symbol:   class GLAutoDrawable
 [mm-javac]   location: class CVSnapshot
 [mm-javac] 7 errors
 [mm-javac] 3 warnings

BUILD FAILED
/home/couguser/Applications/mm_scripts/micro-manager/plugins/build.xml:23: The following error occurred while executing this line:
/home/couguser/Applications/mm_scripts/micro-manager/plugins/build.xml:7: The following error occurred while executing this line:
/home/couguser/Applications/mm_scripts/micro-manager/buildscripts/javabuild.xml:112: Compile failed; see the compiler error output for details.

Total time: 11 seconds
Makefile:579: recipe for target 'plugins.stamp' failed
make[1]: *** [plugins.stamp] Error 1
make[1]: Leaving directory '/home/couguser/Applications/mm_scripts/micro-manager/plugins'
Makefile:521: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1