- baseline_model.ipynb: DataLoader, RNA VAE, ATAC VAE, Model training
- DownStream_ATAC.ipynb: Downstream analysis for generated ATAC data
- DownStream for mouse brain RNA.ipynb: Downsteam analysis for generated RNA data
- Pearson_AUROC.ipynb: Model evaluation metrics
- enhancer_extraction.ipynb: Perturb network to find the relationship between enhancers and genes
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