Feed-forward neural net to predict cancer mutation rate from histone modifications
-
run all cells in
data_prep.ipynb
- this will download and prepare data from the Epigenetic Roadmap Project, and The Cancer Genome Atlas
- should complete in under 2 min with good network connection
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in
train.ipynb
, modifycancer
andfeature_subset
as desired -
run all cells in
train.ipynb
- this will train the selected model, and prepare plots of test performance, feature interpretation
- completion time depends on your compute