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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Hi, Daniel,

We think there's a problem related to the new major version of Bundler that was released shortly after the New Year. If you would download our attempted fix from https://github.com/harvard-library/aspace-import-excel/archive/issue_46.zip , remove the current plugins/aspace-import-excel, and replacing it with the unzipped files (renaming, of course, to aspace-import-excel), run the initialize script, and try again, this hopefully will resolve the problem.

Sorry you're having trouble with this.

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danielsprouse avatar danielsprouse commented on June 10, 2024

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danielsprouse avatar danielsprouse commented on June 10, 2024

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danielsprouse avatar danielsprouse commented on June 10, 2024

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Hi,

If you're on the archivesspace-users mailing list, you will already have seen that we don't know (yet) how to fix this problem; I'm sorry for the delay. It seems that the new Bundler release isn't Playing Well With Others, despite their original assurances. We're in touch with lyrasis about this, as a fix may need to "come from the top" (we suspect that initializing any plugin with a Gemfile will have this problem! :-(

I'm also marking this as a duplicate with #46 (#46 ), as this was previously reported by someone running Aspace under Windows.

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Duplicate of #46

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Duplicate of #46

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danielsprouse avatar danielsprouse commented on June 10, 2024

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pobocks avatar pobocks commented on June 10, 2024

I hate to be the bearer of bad news, but it's pretty unlikely that installing on an earlier version will work - the core problem is that the ASpace release was built in a world where 2.0.1 wasn't out yet, and anything we're doing now is built in a world where it is out.

The build system definitely needs rethinking and reworking. I think if you checked out ASpace 2.5.1 from github, and built it into a zip yourself, then installed the plugin in the resulting build, that should bypass this?

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Blake- avatar Blake- commented on June 10, 2024

How did you end up with bundler 2.0.1 ?

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pobocks avatar pobocks commented on June 10, 2024

The initialize-plugin.bat|.sh bundle installs plugin gems.

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Blake- avatar Blake- commented on June 10, 2024

Running ./scripts/initialize-plugin.sh aspace-import-excel (ArchivesSpace 2.5.2RC) gives me Successfully installed bundler-1.16.1 on Ubuntu 18. That gives you bundler 2 on RHEL?

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pobocks avatar pobocks commented on June 10, 2024

Windows and OSX so far, on 2.5.1 release.

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pobocks avatar pobocks commented on June 10, 2024

Though I'm still seeing a problem with a version where I altered initialize-plugin.bat to do

gem install bundler -v1.17.1
bundle _1.17.1_ install

so it's clear that something else hinky is going on.

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lorawoodford avatar lorawoodford commented on June 10, 2024

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pobocks avatar pobocks commented on June 10, 2024

Are you doing this from a zip release or one you built yourself at some point?

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Blake- avatar Blake- commented on June 10, 2024

zip for me

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lorawoodford avatar lorawoodford commented on June 10, 2024

zips for both the 2.5.1 release and 2.5.2RC. Also just gave it a whirl on the only previously aspace-unaware machine I've got here - an '08 MacBook native booting Ubuntu - and still cannot replicate the issue. initialize-plugin.sh still respects bundler 1.16, even though when I installed ruby/bundler on the system it got 2.0.1.

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Laura, can you run archivesspace after you've initialized it? The original issue was that it seemed to be initialized, but re-starting archivesspace presented a problem.

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lorawoodford avatar lorawoodford commented on June 10, 2024

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pobocks avatar pobocks commented on June 10, 2024

Hmmm. I may have actually mis-remembered whether I replicated on OSX; but we've got Daniel on RHEL and Windows on multiple machines.

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Laura, can you run archivesspace after you've initialized it? The original issue was that it seemed to be initialized, but re-starting archivesspace presented a problem.

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danielsprouse avatar danielsprouse commented on June 10, 2024

Over the coming weekend I will be testing it on Centos7 minimal install, and CentOS7 developer install, and I will be testing migrating back to 2.4.x, installing the plugin, and re-migrate forward to 2.5.x.
I'll post here whatever happens.

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danielsprouse avatar danielsprouse commented on June 10, 2024

also, want to point out that I have tried to install the plugin with current ( 3.0.2 ) and previous ( 2.7.0 ) versions of gem and with bundler 1.16.1 set as the default version of bundler, and both using sudo and as root, still get the same errors.

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danielsprouse avatar danielsprouse commented on June 10, 2024

thought I had it this time, no cigar...

[dsprouse@tslac4avned plugins]$ sudo ../scripts/initialize-plugin2.sh aspace-import-excel
Successfully installed bundler-1.16.1
1 gem installed
Don't run Bundler as root. Bundler can ask for sudo if it is needed, and
installing your bundle as root will break this application for all non-root
users on this machine.
Fetching gem metadata from http://rubygems.org/........
Using bundler 1.16.1
Fetching coderay 1.1.1
Installing coderay 1.1.1
Fetching ffi 1.9.17 (java)
Installing ffi 1.9.17 (java)
Fetching method_source 0.8.2
Installing method_source 0.8.2
Fetching nokogiri 1.7.0.1 (java)
Installing nokogiri 1.7.0.1 (java)
Fetching slop 3.6.0
Installing slop 3.6.0
Fetching spoon 0.0.6
Installing spoon 0.0.6
Fetching pry 0.10.4 (java)
Installing pry 0.10.4 (java)
Fetching rubyzip 1.0.0
Installing rubyzip 1.0.0
Fetching rubyXL 3.1.0
Installing rubyXL 3.1.0
Bundle complete! 3 Gemfile dependencies, 10 gems now installed.
Use bundle info [gemname] to see where a bundled gem is installed.

=====================================

=====================================

got this error in archivesspace.out:
[!] There was an error parsing Gemfile: You cannot specify the same gem twice with different version requirements.
You specified: rubyzip (~> 1.2.2) and rubyzip (= 1.0.0). Bundler cannot continue.

from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/Gemfile:60

-------------------------------------------

require 'asutils'

> ASUtils.load_plugin_gems(self)

-------------------------------------------

from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/dsl.rb:110:in `gem'
from (eval):6:in `<eval>'
from org/jruby/RubyBasicObject.java:1693:in `instance_eval'
from uri:classloader:/asutils.rb:245:in `block in load_plugin_gems'
from org/jruby/RubyArray.java:1734:in `each'
from uri:classloader:/asutils.rb:241:in `load_plugin_gems'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/Gemfile:60:in `<eval>'
from org/jruby/RubyBasicObject.java:1705:in `instance_eval'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/dsl.rb:47:in `eval_gemfile'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/dsl.rb:12:in `evaluate'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/definition.rb:35:in `build'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler.rb:135:in `definition'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler.rb:101:in `setup'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/setup.rb:20:in `<main>'
from org/jruby/RubyKernel.java:961:in `require'
from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/rubygems/core_ext/kernel_require.rb:133:in `require'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/app/main.rb:1:in `<main>'
from org/jruby/RubyKernel.java:961:in `require'
from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/rubygems/core_ext/kernel_require.rb:55:in `require'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/app/main.rb:1:in `block in (root)'
from org/jruby/RubyBasicObject.java:1687:in `instance_eval'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/config.ru:1:in `(root)'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/config.ru:4:in `<main>'
from launcher/launcher.rb:92:in `start_server'
from launcher/launcher.rb:157:in `main'
from launcher/launcher.rb:261:in `<main>'

You're seeing this error because you use JRuby::Rack::ErrorApp::ShowStatus.

). Retrying... tail: archivesspace.out: file truncated

=====================================

=====================================

environment:
[root@tslac4avned ~]# ruby -v; gem -v; gem info bundler; cat /var/www/aris/html/archivesspace/scripts/initialize-plugin2.sh
ruby 2.5.3p105 (2018-10-18 revision 65156) [x86_64-linux]
3.0.2

*** LOCAL GEMS ***

bundler (2.0.1, 1.17.3, 1.17.2, 1.16.1, 1.12.5)
Authors: André Arko, Samuel Giddins, Colby Swandale, Hiroshi
Shibata, David Rodríguez, Grey Baker, Stephanie Morillo, Chris
Morris, James Wen, Tim Moore, André Medeiros, Jessica Lynn Suttles,
Terence Lee, Carl Lerche, Yehuda Katz
Homepage: http://bundler.io
License: MIT
Installed at (2.0.1): /usr/local/lib/ruby/gems/2.5.0
(1.17.3): /usr/local/lib/ruby/gems/2.5.0
(1.17.2): /usr/local/lib/ruby/gems/2.5.0
(1.16.1, default): /usr/local/lib/ruby/gems/2.5.0
(1.12.5): /usr/local/lib/ruby/gems/2.5.0

The best way to manage your application's dependencies

#!/bin/bash

plugin="$1"

We'll provide our own values for these

unset GEM_HOME
unset GEM_PATH

export ASPACE_LAUNCHER_BASE="$("dirname $0"/find-base.sh)"

cd "$ASPACE_LAUNCHER_BASE/gems/gems"
BUNDLER_VERSION=$(ls | grep bundler | cut -d'-' -f 2)

cd "$ASPACE_LAUNCHER_BASE/plugins/$plugin"

if [ "$plugin" = "" ]; then
echo "Usage: $0 "
exit
fi

if [ "$?" != "0" ]; then
echo "Failed to find plugin: $plugin"
exit
fi

export JRUBY=
for dir in ../../gems/gems/jruby-; do
JRUBY="$JRUBY:$dir/lib/"
done

export GEM_HOME=gems

gem info bundler to get version, the original line breaks with "malformed expression" error

#java $JAVA_OPTS -cp "../../lib/$JRUBY" org.jruby.Main -S gem install bundler -v "$BUNDLER_VERSION"
java $JAVA_OPTS -cp "../../lib/$JRUBY" org.jruby.Main -S gem install bundler -v 1.16.1
java $JAVA_OPTS -cp "../../lib/*$JRUBY" org.jruby.Main ../../gems/bin/bundle install --gemfile=Gemfile

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Hi, Daniel,

It's clear that, while your presenting problem, like #46 , was due to the bundler version upgrade, it seems that you have at least one other problem: the initialize-plugin.sh script provided in the core code should not be breaking. I'm tagging @lorawoodford and @lmcglohon on that problem.

That said, when I saw the version collision error message, it was strangely familiar, and I remembered why we hadn't included the Gemfile.lock in our repo: it was to avoid this collision, for which I have no explanation.

I've created Yet Another Branch (sorry), which doesn't include Gemfile.lock. I suggest that, for your initialize-plugin2.sh, you first see what version of the bundler is at

archivesspace/gems/gems/bundler-*

and use that for your explicit bundler, then try again with the zipfile of this branch: issue_47 .

I'm sorry for how frustrating this is.

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danielsprouse avatar danielsprouse commented on June 10, 2024

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Blake- avatar Blake- commented on June 10, 2024

Why are you sudoing things?

sudo ../scripts/initialize-plugin2.sh aspace-import-excel

I'm not sure you should be doing anything with sudo maybe that's messing up permissions? If something ends up owned by root or some other user or not executable that might cause troubles. I think everything should be find owned by your regular user.

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Blake- avatar Blake- commented on June 10, 2024

also, just noticed, sudo ../scripts/initialize-plugin2.sh aspace-import-excel why is that path ../ instead of just ./ that seems wrong maybe? I think you'd want to run that in the ArchivesSpace directory.

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danielsprouse avatar danielsprouse commented on June 10, 2024

first of all, when you run the initialize script it gives you a warning not to run it as root, if you don't use sudo you don't have permissions to modify the directories, so that isn't a thing.
Successfully installed bundler-1.16.1
1 gem installed
Don't run Bundler as root. Bundler can ask for sudo if it is needed, and
installing your bundle as root will break this application for all non-root
users on this machine.
and if you provide the right location, relative or absolute, for the initialize-plugin.sh and the name only for the plugin, that's all that matters, it finds it. It only gives errors if you try to give a pathname/name combination for the argument to the script, which is in this case aspace-import-excel. thanks.

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Blake- avatar Blake- commented on June 10, 2024

It works fine without sudo for me, I see that warning too. I think maybe it's just a warning and not a fatal error?

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danielsprouse avatar danielsprouse commented on June 10, 2024

I have run it as root several times, it isn't the issue.
There are problems with the $BUNDLER_VERSION variable in initialize-plugin.sh, which isn't prepared for being coerced into an array, it gives a malformed expression upon finding multiple bundler versions and makes no effort to pick the default version.
ERROR: While executing gem ... (Gem::Requirement::BadRequirementError)
Illformed requirement ["1.12.5\n1.16.1"]
Gem::GemNotFoundException: can't find gem bundler (>= 0.a)
find_spec_for_exe at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/rubygems.rb:271
activate_bin_path at uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/rubygems.rb:298

at ../../gems/bin/bundle:23
I forced it to use one, and then after it is forced to use a specific version, the Gemfile.lock generated reports back with the wrong bundler version. It is actually reporting back a version that doesn't even seem to exist on my machine
BUNDLED WITH
1.12.5

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danielsprouse avatar danielsprouse commented on June 10, 2024

also, the plugin may want to include (in the installation instructions) to remove the Gemfile.lock each time if circumstances force you to make multiple attempts at the installation of the plugin.

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Hi, Daniel,

Good point about the Gemfile.lock removal, although I tend (and suggest to others) to either delete the entire tree (or rename it), and unzip again, to make sure that there aren't other subtle issues.

Do you now have a clean install? or are you still thrashing?

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danielsprouse avatar danielsprouse commented on June 10, 2024

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Blake- avatar Blake- commented on June 10, 2024

I just did this on centos7, no issues. The only part I didn't do was MySQL. I don't think that would matter in this case.

docker run -d -p 8080:80 -p 8443:443 -p 8022:22 -t otherdata/centos-docker-lamp:latest
docker exec -it hopeful_hamilton bash

as root:
    1  useradd blake
    2  yum install java
    3  su blake

su blake:
    1  wget https://github.com/archivesspace/archivesspace/releases/download/v2.5.2/archivesspace-v2.5.2.zip
    2  unzip archivesspace-v2.5.2.zip 
    3  cd archivesspace
    4  cd plugins/
    5  wget https://github.com/harvard-library/aspace-import-excel/archive/v2.1.18.zip
    6  unzip v2.1.18.zip 
    7  mv aspace-import-excel-2.1.18/ aspace-import-excel
    8  ./scripts/initialize-plugin.sh aspace-import-excel
    9  ./archivesspace.sh start
   10  grep -i error logs/archivesspace.out 


No errors when initializing plugin:

./scripts/initialize-plugin.sh aspace-import-excel
Fetching: bundler-1.16.1.gem (100%)
Successfully installed bundler-1.16.1
1 gem installed
Fetching gem metadata from http://rubygems.org/..............
Resolving dependencies...
Using bundler 1.16.1
Fetching nokogiri 1.10.1 (java)
Installing nokogiri 1.10.1 (java)
Fetching rubyzip 1.2.2
Installing rubyzip 1.2.2
Fetching rubyXL 3.3.29
Installing rubyXL 3.3.29
Bundle complete! 1 Gemfile dependency, 4 gems now installed.
Use `bundle info [gemname]` to see where a bundled gem is installed.

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danielsprouse avatar danielsprouse commented on June 10, 2024

and I got this again anyway. I get this every time, so I think that another part of the plugin or another gem entirely is trying to use two versions of rubyzip.
my current Gemfile and .lock look like this:
[root@tslac4avned aspace-import-excel]# cat Gemfile
ASpaceGems.setup if defined? ASpaceGems

source 'http://rubygems.org'

gem 'rubyXL', "3.1.0", :require => false
gem 'rubyzip', "1.0.0", :require => false
gem 'pry'
[root@tslac4avned aspace-import-excel]# cat Gemfile.lock
GEM
remote: http://rubygems.org/
specs:
coderay (1.1.2)
ffi (1.10.0-java)
method_source (0.9.2)
nokogiri (1.10.1-java)
pry (0.12.2-java)
coderay (> 1.1.0)
method_source (> 0.9.0)
spoon (~> 0.0)
rubyXL (3.1.0)
nokogiri (>= 1.4.4)
rubyzip (>= 1.0.0)
rubyzip (1.0.0)
spoon (0.0.6)
ffi

PLATFORMS
java

DEPENDENCIES
pry
rubyXL (= 3.1.0)
rubyzip (= 1.0.0)

BUNDLED WITH
1.16.1
[root@tslac4avned aspace-import-excel]#

and, as usual when trying to install the pplugin, I get this when I try to start archivesspace:
[!] There was an error parsing Gemfile: You cannot specify the same gem twice with different version requirements.
You specified: rubyzip (~> 1.2.2) and rubyzip (= 1.0.0). Bundler cannot continue.

from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/Gemfile:60

-------------------------------------------

require 'asutils'

> ASUtils.load_plugin_gems(self)

-------------------------------------------

from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/dsl.rb:110:in `gem'
from (eval):6:in `<eval>'
from org/jruby/RubyBasicObject.java:1693:in `instance_eval'
from uri:classloader:/asutils.rb:245:in `block in load_plugin_gems'
from org/jruby/RubyArray.java:1734:in `each'
from uri:classloader:/asutils.rb:241:in `load_plugin_gems'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/Gemfile:60:in `<eval>'
from org/jruby/RubyBasicObject.java:1705:in `instance_eval'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/dsl.rb:47:in `eval_gemfile'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/dsl.rb:12:in `evaluate'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/definition.rb:35:in `build'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler.rb:135:in `definition'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler.rb:101:in `setup'
from /var/www/aris/html/archivesspace/gems/gems/bundler-1.16.1/lib/bundler/setup.rb:20:in `<main>'
from org/jruby/RubyKernel.java:961:in `require'
from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/rubygems/core_ext/kernel_require.rb:133:in `require'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/app/main.rb:1:in `<main>'
from org/jruby/RubyKernel.java:961:in `require'
from uri:classloader:/META-INF/jruby.home/lib/ruby/stdlib/rubygems/core_ext/kernel_require.rb:55:in `require'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/app/main.rb:1:in `block in (root)'
from org/jruby/RubyBasicObject.java:1687:in `instance_eval'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/config.ru:1:in `(root)'
from /var/www/aris/html/archivesspace/data/tmp/jetty-0.0.0.0-8089-backend.war-_-any-/webapp/WEB-INF/config.ru:4:in `<main>'
from launcher/launcher.rb:92:in `start_server'
from launcher/launcher.rb:157:in `main'
from launcher/launcher.rb:261:in `<main>'

You're seeing this error because you use JRuby::Rack::ErrorApp::ShowStatus.

). Retrying...

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danielsprouse avatar danielsprouse commented on June 10, 2024

this is the only occurrence of the string "rubyzip 1.2.2" anywhre in the aspace-import-excel directory:
[root@tslac4avned aspace-import-excel]# grep -R -e "rubyzip 1.2.2" ./*
./gems/specifications/rubyzip-1.2.2.gemspec:# stub: rubyzip 1.2.2 ruby lib

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danielsprouse avatar danielsprouse commented on June 10, 2024

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Blake- avatar Blake- commented on June 10, 2024

Running it in a container shouldn't matter at all, but just in case, I spun up a full virtualbox centos vm and followed the same steps I did in the docker container, with the same results. ArchivesSpace started with the plugin enable with no issues. The only thing I did as root was installing java, I didn't sudo anything.

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bobbi-SMR avatar bobbi-SMR commented on June 10, 2024

Hi, Daniel,

I'm sorry; I've been away for a while. I just noticed that the Gemfile you cat'd above is way out of date!

This is what you should be seeing :

ASpaceGems.setup if defined? ASpaceGems

source 'http://rubygems.org'

gem 'rubyXL', "3.3.29", :require => false

Remind me which release you're trying to implement? For any version of Aspace 2.22 or higher,, you should be using aspace-import-excel V2.1.18

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Blake- avatar Blake- commented on June 10, 2024

Hi all, just wondering how this was going? Did you figure it out?

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danielsprouse avatar danielsprouse commented on June 10, 2024

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Blake- avatar Blake- commented on June 10, 2024

Hi all, just wondering how this was going? Did you figure it out?

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danielsprouse avatar danielsprouse commented on June 10, 2024

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Blake- avatar Blake- commented on June 10, 2024

Hi all, just wondering how this was going? Did you figure it out?

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TheSupportGuy avatar TheSupportGuy commented on June 10, 2024

Hello, was this issue resolved? What was done to fix the issue? I'm running into the same issue on a Windows Server

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danielsprouse avatar danielsprouse commented on June 10, 2024

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danielsprouse avatar danielsprouse commented on June 10, 2024

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TheSupportGuy avatar TheSupportGuy commented on June 10, 2024

Hello, thank you for your replies. We are running ArchivesSpace v2.8.1, aspace-import-excel plugin v3.0.3, and mysql 8.0.24 (which is currently the latest build). Windows server is 2019, fresh install with Java jre1.8.0_291 which was also recently downloaded. The software works fine until I uncomment the line in the cofig.rb (AppConfig[:plugins] = ['aspace-import-excel'] ) for this plugin and then it just refuses to load the admin panel (port 8080) but it does load the public site (port 8081).

from aspace-import-excel.

danielsprouse avatar danielsprouse commented on June 10, 2024

from aspace-import-excel.

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