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Scripts used in the publication "Continent-wide recent emergence of a global pathogen in African amphibians" by Ghose et al. (2023)

Home Page: https://doi.org/10.3389/fcosc.2023.1069490

R 100.00%
r pca logistic-regression worldclim disease-ecology disease-spread bayesian mcmc

bd_emergence_africa's Introduction

Recent Emergence of Bd in Africa

This repository holds analytic code used in preparing the "Continent-wide recent emergence of a global pathogen in African amphibians" publication by Ghose et al. (2023; Frontiers in Conservation Science)

The repository consists of:

  • Scripts on pulling, preparing, cleaning up, and extracting bioclimactic and anthropogenic data from rasters provided by WorldClim and Venter et al. (2016); respectively
  • Scripts on checking assumptions required for modeling, generating PCA, and for performing both the MCMC Bayesian model of pathogen arrival and the logistic regression included in the paper

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