hatchin/flowsom

FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data

flowsom's Issues

AttributeError: 'DataFrame' object has no attribute 'as_matrix'

As Pandas has been updated to v1.0, I think as_matrix should be replaced by .values(). See https://pandas.pydata.org/pandas-docs/version/0.23.4/generated/pandas.DataFrame.as_matrix.html

Otherwise, great to have FlowSOM in Python as well!

Reassigning FlowSOM package

Dear @Hatchin ,

We (original authors of the FlowSOM package) have recently translated the FlowSOM package to R ourselves, including similar options for visualisation as available in R. As your package does not seem maintained anymore (See issue #1, with the release version of the code being broken since 2020), we were wondering if you would be willing to transfer the name to our project, so we could give users the most straight-forward way of installing our package.

Kind regards,
Sofie