Collecting BrainGB
Using cached BrainGB-1.0.3-py3-none-any.whl (18 kB)
Collecting numpy>=1.19.5
Using cached numpy-1.24.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Collecting torch>=1.10.2
Using cached torch-2.0.1-cp311-cp311-manylinux1_x86_64.whl (619.9 MB)
Collecting scikit-learn>=0.24.2
Using cached scikit_learn-1.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.6 MB)
Collecting networkx>=2.5.1
Using cached networkx-3.1-py3-none-any.whl (2.1 MB)
Collecting node2vec>=0.4.3
Using cached node2vec-0.4.6-py3-none-any.whl (7.0 kB)
Collecting scipy
Using cached scipy-1.10.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.1 MB)
Collecting torch-geometric
Using cached torch_geometric-2.3.1.tar.gz (661 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting torch-scatter
Using cached torch_scatter-2.1.1.tar.gz (107 kB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [6 lines of output]
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/tmp/pip-install-a_jou45r/torch-scatter_83b3c88b392349f08eac35a458cb4c7b/setup.py", line 8, in <module>
import torch
ModuleNotFoundError: No module named 'torch'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
ERROR: Could not find a version that satisfies the requirement torch~=1.10.2 (from versions: 1.13.0, 1.13.1, 2.0.0, 2.0.1)
ERROR: No matching distribution found for torch~=1.10.2
Collecting braingb
Using cached BrainGB-1.0.3-py3-none-any.whl (18 kB)
Collecting torch-scatter
Using cached torch_scatter-2.1.1.tar.gz (107 kB)
Preparing metadata (setup.py) ... done
Collecting torch-geometric
Using cached torch_geometric-2.3.1.tar.gz (661 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting node2vec>=0.4.3
Using cached node2vec-0.4.6-py3-none-any.whl (7.0 kB)
Requirement already satisfied: networkx>=2.5.1 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from braingb) (2.8.4)
Requirement already satisfied: torch>=1.10.2 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from braingb) (1.12.1)
Requirement already satisfied: scipy in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from braingb) (1.10.0)
Requirement already satisfied: numpy>=1.19.5 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from braingb) (1.23.5)
Requirement already satisfied: scikit-learn>=0.24.2 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from braingb) (1.2.1)
Collecting torch-sparse
Using cached torch_sparse-0.6.17.tar.gz (209 kB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: tqdm<5.0.0,>=4.55.1 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from node2vec>=0.4.3->braingb) (4.64.1)
Requirement already satisfied: gensim<5.0.0,>=4.1.2 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from node2vec>=0.4.3->braingb) (4.3.0)
Requirement already satisfied: joblib<2.0.0,>=1.1.0 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from node2vec>=0.4.3->braingb) (1.1.1)
Requirement already satisfied: threadpoolctl>=2.0.0 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from scikit-learn>=0.24.2->braingb) (2.2.0)
Requirement already satisfied: typing_extensions in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from torch>=1.10.2->braingb) (4.4.0)
Requirement already satisfied: jinja2 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from torch-geometric->braingb) (3.1.2)
Requirement already satisfied: requests in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from torch-geometric->braingb) (2.28.1)
Requirement already satisfied: pyparsing in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from torch-geometric->braingb) (3.0.9)
Requirement already satisfied: psutil>=5.8.0 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from torch-geometric->braingb) (5.9.0)
Requirement already satisfied: smart-open>=1.8.1 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from gensim<5.0.0,>=4.1.2->node2vec>=0.4.3->braingb) (5.2.1)
Collecting FuzzyTM>=0.4.0
Using cached FuzzyTM-2.0.5-py3-none-any.whl (29 kB)
Requirement already satisfied: MarkupSafe>=2.0 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from jinja2->torch-geometric->braingb) (2.1.1)
Requirement already satisfied: certifi>=2017.4.17 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from requests->torch-geometric->braingb) (2022.12.7)
Requirement already satisfied: idna<4,>=2.5 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from requests->torch-geometric->braingb) (3.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from requests->torch-geometric->braingb) (1.26.14)
Requirement already satisfied: charset-normalizer<3,>=2 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from requests->torch-geometric->braingb) (2.0.4)
Collecting pyfume
Using cached pyFUME-0.2.25-py3-none-any.whl (67 kB)
Requirement already satisfied: pandas in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from FuzzyTM>=0.4.0->gensim<5.0.0,>=4.1.2->node2vec>=0.4.3->braingb) (1.5.3)
Requirement already satisfied: python-dateutil>=2.8.1 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from pandas->FuzzyTM>=0.4.0->gensim<5.0.0,>=4.1.2->node2vec>=0.4.3->braingb) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from pandas->FuzzyTM>=0.4.0->gensim<5.0.0,>=4.1.2->node2vec>=0.4.3->braingb) (2022.7)
Collecting simpful
Using cached simpful-2.11.0-py3-none-any.whl (32 kB)
Collecting fst-pso
Using cached fst_pso-1.8.1-py3-none-any.whl
Requirement already satisfied: six>=1.5 in /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages (from python-dateutil>=2.8.1->pandas->FuzzyTM>=0.4.0->gensim<5.0.0,>=4.1.2->node2vec>=0.4.3->braingb) (1.16.0)
Collecting miniful
Using cached miniful-0.0.6-py3-none-any.whl
Building wheels for collected packages: torch-geometric, torch-scatter, torch-sparse
Building wheel for torch-geometric (pyproject.toml) ... done
Created wheel for torch-geometric: filename=torch_geometric-2.3.1-py3-none-any.whl size=910459 sha256=732e7d13bc8a732818661a209b0d3a48adfba99695a0e8cf7b837314916c047d
Stored in directory: /home/aritche/.cache/pip/wheels/b5/5d/40/7c7d9ae359e1ebb834f9fcc0b8a235c4dfe31a166b41279693
Building wheel for torch-scatter (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [47 lines of output]
No CUDA runtime is found, using CUDA_HOME='/usr/local/cuda'
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/__init__.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/segment_coo.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/testing.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/placeholder.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/segment_csr.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/scatter.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/utils.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
creating build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/__init__.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/logsumexp.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/softmax.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/std.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
running egg_info
writing torch_scatter.egg-info/PKG-INFO
writing dependency_links to torch_scatter.egg-info/dependency_links.txt
writing requirements to torch_scatter.egg-info/requires.txt
writing top-level names to torch_scatter.egg-info/top_level.txt
reading manifest file 'torch_scatter.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*' found under directory 'test'
adding license file 'LICENSE'
writing manifest file 'torch_scatter.egg-info/SOURCES.txt'
running build_ext
building 'torch_scatter._segment_coo_cpu' extension
creating build/temp.linux-x86_64-cpython-38
creating build/temp.linux-x86_64-cpython-38/csrc
creating build/temp.linux-x86_64-cpython-38/csrc/cpu
gcc -pthread -B /home/aritche/miniconda3/envs/braingb/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DWITH_PYTHON -Icsrc -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/TH -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/THC -I/home/aritche/miniconda3/envs/braingb/include/python3.8 -c csrc/cpu/segment_coo_cpu.cpp -o build/temp.linux-x86_64-cpython-38/csrc/cpu/segment_coo_cpu.o -O3 -Wno-sign-compare -DAT_PARALLEL_OPENMP -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE=\"_gcc\" -DPYBIND11_STDLIB=\"_libstdcpp\" -DPYBIND11_BUILD_ABI=\"_cxxabi1016\" -DTORCH_EXTENSION_NAME=_segment_coo_cpu -D_GLIBCXX_USE_CXX11_ABI=1 -std=gnu++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/python.h:12,
from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/extension.h:6,
from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:6,
from csrc/cpu/../extensions.h:2,
from csrc/cpu/segment_coo_cpu.h:3,
from csrc/cpu/segment_coo_cpu.cpp:1:
/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/utils/pybind.h:7:10: fatal error: pybind11/pybind11.h: No such file or directory
7 | #include <pybind11/pybind11.h>
| ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for torch-scatter
Running setup.py clean for torch-scatter
Building wheel for torch-sparse (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [70 lines of output]
No CUDA runtime is found, using CUDA_HOME='/usr/local/cuda'
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/index_select.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/sample.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/storage.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/bandwidth.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/mul.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/convert.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/narrow.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/reduce.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/typing.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/spadd.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/__init__.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/masked_select.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/testing.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/tensor.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/spspmm.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/matmul.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/cat.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/rw.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/coalesce.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/add.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/select.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/metis.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/diag.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/saint.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/spmm.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/eye.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/transpose.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/utils.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
copying torch_sparse/permute.py -> build/lib.linux-x86_64-cpython-38/torch_sparse
running egg_info
writing torch_sparse.egg-info/PKG-INFO
writing dependency_links to torch_sparse.egg-info/dependency_links.txt
writing requirements to torch_sparse.egg-info/requires.txt
writing top-level names to torch_sparse.egg-info/top_level.txt
reading manifest file 'torch_sparse.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*' found under directory 'third_party/parallel-hashmap/css'
warning: no previously-included files matching '*' found under directory 'third_party/parallel-hashmap/html'
warning: no previously-included files matching '*' found under directory 'third_party/parallel-hashmap/tests'
warning: no previously-included files matching '*' found under directory 'third_party/parallel-hashmap/examples'
warning: no previously-included files matching '*' found under directory 'third_party/parallel-hashmap/benchmark'
warning: no previously-included files matching '*' found under directory 'test'
warning: no previously-included files matching '*' found under directory 'benchmark'
adding license file 'LICENSE'
writing manifest file 'torch_sparse.egg-info/SOURCES.txt'
running build_ext
building 'torch_sparse._neighbor_sample_cpu' extension
creating build/temp.linux-x86_64-cpython-38
creating build/temp.linux-x86_64-cpython-38/csrc
creating build/temp.linux-x86_64-cpython-38/csrc/cpu
gcc -pthread -B /home/aritche/miniconda3/envs/braingb/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DWITH_PYTHON -Icsrc -Ithird_party/parallel-hashmap -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/TH -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/THC -I/home/aritche/miniconda3/envs/braingb/include/python3.8 -c csrc/cpu/neighbor_sample_cpu.cpp -o build/temp.linux-x86_64-cpython-38/csrc/cpu/neighbor_sample_cpu.o -O3 -Wno-sign-compare -DAT_PARALLEL_OPENMP -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE=\"_gcc\" -DPYBIND11_STDLIB=\"_libstdcpp\" -DPYBIND11_BUILD_ABI=\"_cxxabi1016\" -DTORCH_EXTENSION_NAME=_neighbor_sample_cpu -D_GLIBCXX_USE_CXX11_ABI=1 -std=gnu++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/python.h:12,
from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/extension.h:6,
from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:6,
from csrc/cpu/../extensions.h:2,
from csrc/cpu/neighbor_sample_cpu.h:3,
from csrc/cpu/neighbor_sample_cpu.cpp:1:
/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/utils/pybind.h:7:10: fatal error: pybind11/pybind11.h: No such file or directory
7 | #include <pybind11/pybind11.h>
| ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for torch-sparse
Running setup.py clean for torch-sparse
Successfully built torch-geometric
Failed to build torch-scatter torch-sparse
Installing collected packages: torch-scatter, torch-sparse, simpful, miniful, torch-geometric, fst-pso, pyfume, FuzzyTM, node2vec, braingb
Running setup.py install for torch-scatter ... error
error: subprocess-exited-with-error
× Running setup.py install for torch-scatter did not run successfully.
│ exit code: 1
╰─> [49 lines of output]
No CUDA runtime is found, using CUDA_HOME='/usr/local/cuda'
running install
/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/__init__.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/segment_coo.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/testing.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/placeholder.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/segment_csr.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/scatter.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/utils.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
creating build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/__init__.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/logsumexp.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/softmax.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/std.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
running egg_info
writing torch_scatter.egg-info/PKG-INFO
writing dependency_links to torch_scatter.egg-info/dependency_links.txt
writing requirements to torch_scatter.egg-info/requires.txt
writing top-level names to torch_scatter.egg-info/top_level.txt
reading manifest file 'torch_scatter.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*' found under directory 'test'
adding license file 'LICENSE'
writing manifest file 'torch_scatter.egg-info/SOURCES.txt'
running build_ext
building 'torch_scatter._segment_coo_cpu' extension
creating build/temp.linux-x86_64-cpython-38
creating build/temp.linux-x86_64-cpython-38/csrc
creating build/temp.linux-x86_64-cpython-38/csrc/cpu
gcc -pthread -B /home/aritche/miniconda3/envs/braingb/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DWITH_PYTHON -Icsrc -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/TH -I/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/THC -I/home/aritche/miniconda3/envs/braingb/include/python3.8 -c csrc/cpu/segment_coo_cpu.cpp -o build/temp.linux-x86_64-cpython-38/csrc/cpu/segment_coo_cpu.o -O3 -Wno-sign-compare -DAT_PARALLEL_OPENMP -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE=\"_gcc\" -DPYBIND11_STDLIB=\"_libstdcpp\" -DPYBIND11_BUILD_ABI=\"_cxxabi1016\" -DTORCH_EXTENSION_NAME=_segment_coo_cpu -D_GLIBCXX_USE_CXX11_ABI=1 -std=gnu++14
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/python.h:12,
from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/extension.h:6,
from /home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:6,
from csrc/cpu/../extensions.h:2,
from csrc/cpu/segment_coo_cpu.h:3,
from csrc/cpu/segment_coo_cpu.cpp:1:
/home/aritche/miniconda3/envs/braingb/lib/python3.8/site-packages/torch/include/torch/csrc/utils/pybind.h:7:10: fatal error: pybind11/pybind11.h: No such file or directory
7 | #include <pybind11/pybind11.h>
| ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> torch-scatter
note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
gensim 4.3.0 requires FuzzyTM>=0.4.0, which is not installed.
Successfully installed PyYAML-5.4.1 PythonWebHDFS-0.2.3 astor-0.8.1 contextlib2-21.6.0 h5py-3.6.0 json-tricks-3.16.1 libsvm-3.23.0.4 matplotlib-3.4.3 networkx-2.6.3 nni-2.10 nose-1.3.7 numpy-1.22.4 pandas-1.4.4 prettytable-3.7.0 responses-0.23.1 schema-0.7.5 scikit-learn-1.0.2 scipy-1.7.3 simplejson-3.19.1 tensorly-0.6.0 torch-1.10.2 torch-geometric-2.0.4 tqdm-4.62.3 typeguard-4.0.0 types-PyYAML-6.0.12.9 websockets-11.0.3