hettling / biggr Goto Github PK
View Code? Open in Web Editor NEWBioconductor package BiGGR for constraint based modeling using metabolic reconstruction databases
License: GNU General Public License v3.0
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anandgavaibiggr's Issues
get rid of rsbml dependence
The libsbml (http://sbml.org/Software/libSBML) now published R-bindings for their library. Therefore rsbml, which in turn uses libsbml, seems obsolete and the package should be adapted to run with the R version of libsbml.
Build problems of devel version
The daily build seems to have errors/timeout with the latest devel version of BiGGR, this should be fixed as soon as possible.
Update package vignette
In the package vignette, there are still old assumptions on the brain model. For instance, GABA shunt is 40% of glucose uptake, but in the newer analysis this becomes 32%. Also the constraint on oxygen diffusion should be removed.
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