hmenager/workflow-is-galaxy-hall

Miscelaneous material and documentation about the workflow IS Galaxy side of things.

Documentation

This document contains various links related to Galaxy-CWL implementation and test.

Hackathon Nov 2018

https://github.com/elixir-europe/BioHackathon/blob/master/tools/CWL%20support%20in%20Galaxy/README.md

https://docs.google.com/presentation/d/1zXpOhJDeVYs-J-1jt0rz7gox10o78cFqshiM-wy8Xh0/edit#slide=id.p1

cmsearch-multimodel-wf workflow test

Overview

https://github.com/hmenager/workflow-is-galaxy-hall/blob/master/sync201807/cmsearch-multimodel-wf.md

Code modification details

https://github.com/hmenager/workflow-is-galaxy-hall/blob/master/sync201807/cmsearch-multimodel-wf_code.md

Demo

https://github.com/hmenager/workflow-is-galaxy-hall/blob/master/sync201807/cmsearch-multimodel-wf_demosrvinst.md

https://github.com/hmenager/workflow-is-galaxy-hall/blob/master/sync201807/cmsearch-multimodel-wf_demo.md

cmsearch-multimodel-wf Workflow CWL file

https://github.com/hmenager/workflow-is-cwl/blob/master/workflows/cmsearch-multimodel-wf.cwl

Development environment setup

https://github.com/hmenager/workflow-is-galaxy-hall/blob/master/dev_env_setup.md

Issues

Galaxy-CWL implementation issues

https://github.com/common-workflow-language/galaxy/issues

Galaxy-CWL tools and workflow issues

https://github.com/hmenager/workflow-is-cwl/issues

Repositories fork

Galaxy-CWL

https://github.com/hmenager/galaxy

Cwltool

https://github.com/hmenager/cwltool

ELIXIR Workflow

https://github.com/hmenager/workflow-is-cwl

Original repositories

Galaxy-CWL

https://github.com/common-workflow-language/galaxy

Cwltool

https://github.com/common-workflow-language/cwltool

ELIXIR Workflow

https://github.com/mscheremetjew/workflow-is-cwl