Comments (1)
We've never tested fmlrc on RNA data. However, given a set of long reads and short reads that are both RNA, I have no reason to believe it wouldn't work. Of course, complications from expression of different transcripts might impact correction. It's hard to say for sure since we've never tested it.
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Related Issues (20)
- Comment on % Pacbio sequences corrected ? HOT 3
- Segmentation fault: 11 HOT 6
- FMLRC (Or Ropebwt) not working correctly HOT 8
- Error during msbwt HOT 2
- correcting low cov reads from heterozygous genomes HOT 5
- Error corrupted size vs. prev_size HOT 6
- How to generate RLE BWT format for paired-end illumina data HOT 2
- Question about final command HOT 4
- iterated times matter with the results? HOT 4
- Index no output HOT 9
- [fmlrc-convert] ERROR - unexpected symbol in input: char: " ", hex: "20" HOT 2
- About short reads: insert size and type HOT 3
- Erronneous all-adenine contigs introduced HOT 2
- ../fmlrc-convert: No such file or directory HOT 3
- No output file HOT 4
- correct at ends of reads is not completed HOT 2
- Correcting Nanopore long reads with PacBio HiFi HOT 3
- fastq format long read file input? HOT 5
- Q: multiple round of flmrc2? HOT 3
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