hrk2109 Goto Github PK

10x-scatac-2019

Publication Page for Satpathy*, Granja* et al 2019

affymetrix-power-tools

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

alfred

BAM Statistics, Feature Counting and Annotation

alpine

Modeling and correcting fragment sequence bias for RNA-seq

amazon-sagemaker-examples

Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker

anaconda-recipes

Continuum managed recipes for free anaconda packages.

anndata

Annotated data.

arm-rstudio

Compile RStudio for ARM Ubuntu 14.04 on Samsung Chromebook

ascat

ASCAT copy number R package

atlantis

Code used for biomarker discovery using party (building conditional random forests)

atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bamutil

barcoding

Lima - Demultiplex Barcoded PacBio Samples

bestnormalize

Estimate a suite of normalizing transformations, including a new adaptation of a technique based on ranks which can guarantee normally distributed transformed data if there are no ties: ordered quantile normalization (ORQ).

bic-rnaseq

Internal portable version of BIC RNAseq pipeline; uses Bpipe

bic-variants_pipeline

BIC@MSKCC Variants Pipeline

bigdatascript

BigDataScript: Scirpting language for big data

bioawk

BWK awk modified for biological data

biomartr

Genomic Data Retrieval with R

blast2bam

box-linux-sync

Linux client for Box.com

boxr

:package: A high-level R interface for the box.com API

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

build-your-own-x

🤓 Build your own (insert technology here)

car-t

Clonal kinetics and single-cell transcriptional profiling of adoptively transferred CD19-specific CD8+ CAR-T cells

cbioportal

cdnormbio

R package: Condition-Decomposition Normalization for Biological Applications

cellprofiler

An open-source application for biological image analysis