hrshdhgd/pato

PATO - the Phenotype And Trait Ontology

Hi 👋

Bioinformatics Researcher

🔭 I’m currently working on

• Automation of ontology change requests: ontobot-change-agent
• Ontology backed named entity recognition (NER): ontoRunNER
• Application of the above as plugins to oaklib
  • oakx-spacy
  • oakx-oger
• Knowledge Graph development: kg-microbe
• Graph ML based projects: neat-ml driven by neat-schema
• Mapping ontologies using simple standards: sssom driven by sssom-schema
• Application Ontology development: BERO

🌱 I’m currently learning

• Rust via rustlings
  • Project that came out of learning Rust: semsimian
• Efficient project development and improvement by applying LLMs: CoderGPT

Languages and Tools:

 

pato's Issues

Test synonym addition

Hey ontobot!, apply:

• create broad synonym 'chroma' for PATO:0000014