i2b2-omop / i2o-transform Goto Github PK
View Code? Open in Web Editor NEWPCORnet Ontology to OMOP - beta!
PCORnet Ontology to OMOP - beta!
This line will cause multiple rows to be inserted per fact:
i2o-transform/MSSQL/OMOPLoader.sql
Line 1061 in 78083d3
See issue #74 in i2p-transform.
Short-term fix would be to rip out normal ranges until better solution can be implemented.
Demographics has a trailing slash issue that was fixed in i2p for CDM 3.1.
OMOP Loader requires i2b2patientlist, but it is populated after the program is run and all procedures are loaded. The i2b2loyalty_patients view definition should not require this, or it should create an empty patient list.
Achilles Heel flags race codes for Multiple Race and Refuse to Answer because they belong in the Observation domain. But there are no equivalents in the Race domain....
measurement.measurement_datetime always has the date of 1900-01-01
NOTE; The measurement.measurement_date field seems to contain the correct date, and the time part of the datetime field also seems to be correct.
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