ibnesayeed/binsearch

A Python module for binary search in sorted files

BinSearch

A Python module for binary search in sorted files.

Objective

Given a sorted file, perform binary search on disk to find if a given lookup key is present in the file. The file can have fielded data and matching is desired to be performed on a select few fields only. It may also be desired to perform a prefix match where the lookup key is a prefix of one or more records in the file. The search needs to be able to report no matches, all matches, any match, the first match, or the last match. In case a start and/or end byte position(s) is/are provided, the search should only be performed within that given range.

Functions

find(fh, key, **kw)       => None | ANY_MATCHED_LINE
find_first(fh, key, **kw) => None | FIRST_MATCHED_LINE
find_last(fh, key, **kw)  => None | LAST_MATCHED_LINE
find_all(fh, key, **kw)   => ITERATOR_OVER_ALL_MATCHED_LINES

Parameters

• fh - File handle, open for binary read
• key - Bytes, search key
• fields - Int, number of fields in each line from the beginning to match against (Default: None)
• matcher - Function, to identify the portion of lines read for matching, overrides fields param (Default: line.strip())
• prefix - Boolean, whether perform prefix match or exact (Default: False)
• prefix_boundary - Bytes, only consider prefix match if the following character is a boundary character (Default: '')
• start - Int, beginning byte of the start the search boundary (Default: 0)
• end - Int, end byte of the search boundary (Default: fh.size())

Use Cases

We can see it being useful in many places, but following are a few places where we do have the need:

• InterPlanetary Wayback (IPWB) replay index search
• MementoMap prefix search
• A built-in CLI tool to perform binary search on files

Considerations

• Should the caller provide a file path (and let the API deal with opening and closing the file) or an open file handle?
  • If the API handles file opening/closing then it will open and close files on each request.
  • If the caller provides a file handle then it can be reused, but the caller needs to write a couple extra lines.
• Should the API check for the file being sorted before performing lookup?
  • If the input file is not sorted then search function may behave in unexpected ways.
  • Checking for sorting has linear complexity that will require reading the whole file once, binding it to each search call will render the benefit of binary search useless.
  • Perhaps we can provide a separate helper function, in case the user wants to ensure it once before performing searches as a bootstrapping procedure.
• Should the API work for reverse sorted files too?
  • It is doable without any efficiency cost, but I do not see enough motivation to add more code complexity, unless there are compelling use cases.
• Should the find_all() function return None if no match found or an iterator which will terminate at the first iteration and will evaluate to 0 on length calculation?
  • Returning an empty iterator seems more sane approach, but the caller will need to iterate it at least once to see whether there was a match.
  • Returning None means the return value is polymorphic and call to the function cannot be used in a loop without first checking for None value.
• Should we use an existing implementation?
  • There are a few similar implementations in Python, but their license is not permissive and can not be used in projects with permissive licenses.