Comments (2)
Test to adress problem:
c680_repeated_read_names_per_group_in_bam
Resources (json + bam):
Duplicate renames with different read groups
Duplicate renames with same read groups
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Completed and merged into main. Closing
from seq-tools.
Related Issues (20)
- New checker (c260): fileName pattern check HOT 1
- Feature Request: QA from seq-tools HOT 1
- Improvement: print short message to inform user the total number of metadata files to be checked HOT 1
- New check: for BAM submission, detect whether it's paired end or not and whether it matches what's in the metadata HOT 1
- New feature: add a flag to skip md5sum check HOT 1
- 🐛 Validation does not check empty string for required fields HOT 1
- 🐛 Failing c650 test due to empty SM HOT 3
- 🐛 Regex check not matching schema in c120_permissible_char_in_rg_id.py HOT 3
- New check: for RNA-Seq BAM submit data, detect the `library_strandedness` and check whether it matches what's in the metadata HOT 3
- Add README.md for Validation Checks in the Seq-Tools HOT 6
- Build New Docker Container for Seq-Tools for Quay.io HOT 1
- Update Seq-Tools Descriptions on ARGO Doc Site HOT 1
- Detect `RNA-seq strandedness` in FASTQ HOT 9
- FASTQ sanity check HOT 2
- Add expected running duration of each check for a given normal file size input
- Performance improvements for`seq-tools` HOT 2
- Temporarily disable certain tests HOT 1
- Fix `submitter_read_group_id` HOT 1
- Add skip for c140 to platform uniqueness
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