Comments (3)
edsu7
commented on August 12, 2024
Added in if else case to add warning when scenario pops up
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b-f-chan
commented on August 12, 2024
Move to QA until PR merged, then test before closing
This is a standalone tool - Once ready, can release as new tag/version on GitHub (no dependencies on Overture)
However, might need to build a new Docker container on Quay.io
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edsu7
commented on August 12, 2024
Merged into main. Closing.
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Related Issues (20)
- New checker (c260): fileName pattern check HOT 1
- New check: repeated identical reads from different read groups HOT 2
- Feature Request: QA from seq-tools HOT 1
- Improvement: print short message to inform user the total number of metadata files to be checked HOT 1
- New check: for BAM submission, detect whether it's paired end or not and whether it matches what's in the metadata HOT 1
- New feature: add a flag to skip md5sum check HOT 1
- 🐛 Validation does not check empty string for required fields HOT 1
- 🐛 Regex check not matching schema in c120_permissible_char_in_rg_id.py HOT 3
- New check: for RNA-Seq BAM submit data, detect the `library_strandedness` and check whether it matches what's in the metadata HOT 3
- Add README.md for Validation Checks in the Seq-Tools HOT 6
- Build New Docker Container for Seq-Tools for Quay.io HOT 1
- Update Seq-Tools Descriptions on ARGO Doc Site HOT 1
- Detect `RNA-seq strandedness` in FASTQ HOT 9
- FASTQ sanity check HOT 2
- Add expected running duration of each check for a given normal file size input
- Performance improvements for`seq-tools` HOT 2
- Temporarily disable certain tests HOT 1
- Fix `submitter_read_group_id` HOT 1
- Add skip for c140 to platform uniqueness
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