Note: This is very simple and basic package, purely as my kick-starter code for working on creating a package.
- Option 1 via devtools
$ R
- In R interface of your choice
> install.packages("devtools")
> library(devtools)
> install.github("idlip/bioseq")
> library(bioseq)
- Option 2 via
tar.gz
orzip
file from this Git repo.
install.packages("<path/to/bioseq>.tar.gz", repos=NULL)
- For any function, you can list them
bioseq::<tab>
by hitting tab. - You can refer for documentation/man page via
?bioseq
,?bioseq_complement
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- An interactive function with no arguments required.
- It prompts for user to input DNA sequence data, and provides option to give All (A) details, Complementary (C), Transcript (T) or Reverse (R) complement.
- Takes 1 argument as DNA sequence and give the return value as characters of complementary strand.
- Takes 1 argument as DNA sequence and provide the reverse complement of it.
- Takes 1 argument as DNA sequence and return the mRna transcript of the sequence.
- [ ] Make the package DNA agnostic, so it works on RNA and also protein sequence.
- [ ] Add more basic functions to get minimal things done.