Comments (2)
We deprecated this function, you can checkout the mendel plugin for bcftools.
from akt.
Thank you for the response. I am new to bcftools. Could you give a command example for a simple Mendel consistency check?
from akt.
Related Issues (20)
- Problem opening input file. HOT 3
- akt pca error : Failed to read the regions: pca.bcf HOT 7
- Error on suse11.1 HOT 2
- Bad genotypes at ...? HOT 3
- ibd options HOT 1
- recent github release tarball? HOT 4
- Bring back prune? HOT 1
- format for `--freq-file FILE`? HOT 2
- `--freq-file` not using all available SNPs present in both study and freq-file VCF HOT 5
- Problem opening input.bcf -- No debug log HOT 7
- Allow both -F and -r/-R to be used in `kin`
- Kinship coefficient calculation inconsistent with missing data HOT 11
- kin with unindexed bcf/vcf files
- pca index assertion error HOT 2
- documentation on changes to wgs.grch37.vcf.gz site vcf
- explanation of basic resource requirements? HOT 2
- AKT PCA....Bad genotypes HOT 6
- Segmentation fault error HOT 2
- update docs HOT 1
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from akt.