inbo/mica-occurrences

Darwin Core mapping for the aggregated Muskrat dataset

MICA occurrence datasets

Rationale

This repository contains the functionality to standardize several datasets of Muskrat and Coypu occurrences to Darwin Core Occurrence datasets that can be harvested by GBIF. These datasets are published in the framework of the project Management of Invasive Coypu and muskrAt in Europe (MICA).

Datasets

Title (and GitHub directory)	IPT	GBIF
Muskrat captures in Flanders, Belgium	mica-legacy-occurrences	https://doi.org/10.15468/pequ4z
MICA - Muskrat occurrences collected by RATO in East Flanders, Belgium	mica-rato-occurrences	https://doi.org/10.15468/5fps96
MICA - Muskrat and coypu occurrences collected by UVW in The Netherlands	mica-uvw-occurrences	https://doi.org/10.15468/qjds4c
MICA - Muskrat and coypu camera trap observations in Belgium, the Netherlands and Germany	mica-agouti-occurrences	https://doi.org/10.15468/5tb6ze
MICA - Muskrat occurrences collected by VMM in Flanders, Belgium	mica-vmm-occurrences	https://doi.org/10.15468/gwzwk4
RATO - daily operations commissioned by the province East Flanders, Belgium	rato-occurrences	https://doi.org/10.15468/fw2rbx
Mica - Muskrat, Raccoon and Coypu occurrences collected by ITAW in Germany	mica-itaw-occurrences	https://doi.org/10.15468/qzcu4s
Muskrat trapping data in the Netherlands 1987 – 2014	hwh_muskrat_1987-2014	https://doi.org/10.15468/ytr96y
VMM - Rat control occurrences in Flanders, Belgium	vmm-rattenapp-occurrences	https://doi.org/10.15468/wquzva
MICA - Muskrat occurrences collected in West Flanders, Belgium	Mica West Vlaanderen	https://doi.org/10.15468/kpzkx3

Repo structure

The structure for each dataset in datasets is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED should not be edited manually.

├── data
│   ├── raw                  : Source data, input for mapping script
│   ├── interim              : Derived data for verification GENERATED
│   └── processed            : Darwin Core output of mapping script GENERATED
│
├── src
│   └── dwc_mapping.Rmd      : Darwin Core mapping script
│
└── specs
    └── dwc_occurrences.yaml : Whip specifications for validation

Contributors

List of contributors

License

MIT License for the code and documentation in this repository. The included data is released under another license.