Comments (7)
Hi,
it wasn't planned initially but it might be a good idea. I'll let this issue open, to inform you if we decide to do it.
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Hi,
with the 1.0 version, we released Hapo-G to Anaconda. If you're still interested, could you please try and run:
conda create -n hapog -y python==3.6
conda activate hapog
conda install -c lbgb hapog
hapog.py -h
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Just on my side, I gave it whirl andI got the same issue as previously in #3
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Hi @SAMtoBAM,
we're very grateful for your feedback, it is very hard for us to fix this issue as we don't experience it. We've made modifications to the conda package, could you please try the following commands?
# Remove previous HAPO-G env
conda remove --name hapog --all
conda create -n hapog
conda activate hapog
conda install -c lbgb_cea hapog
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Hello @bistace
Conda package is working well for me. Thanks for the release !
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Related Issues (20)
- Conda install fails HOT 3
- Polish before or after Redundans HOT 1
- ModuleNotFoundError HOT 1
- Error with --threads 1 HOT 1
- Minimum coverage for correction? HOT 2
- PackageNotFoundError HOT 4
- How do I get a vcf file? HOT 2
- ERRORs when using newest version on conda HOT 1
- hapog introduce non-codon character in the polished sequence HOT 13
- Question: how HAPO-G handles N in reads? HOT 4
- Question: how about polishing a phased diploid genome assembly? HOT 2
- Memory issue HOT 5
- Explanation of hapog.changes HOT 1
- TypeError issue HOT 12
- long and short reads HOT 1
- Does HAPO-G correct ambiguous bases in fasta
- Error with --threads 1 - persisting HOT 4
- Plant genome HOT 7
- High RAM consumption in plant genome HOT 10
- Phased assembly polishing
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