int-brain-lab Goto Github PK

allen-colors

analysis

Initial repo for behavioral analyses

ann-rnns

Train ANN-RNNs to perform the IBL task and then dissect them.

atlas

Brain flatmaps generation

behavior_models

bpod_hifi_firmware

Firmware for Bpod HiFi Module

brainregister

Python package for elastix-based registration of tissues to atlases; with mouse brain registration to the Allen CCFv3 built-in.

bwm_dmn

default mode network manifold analysis

citricacid

Urai AE, Aguillon-Rodriguez V, Laranjeira IC, Cazettes F, The International Brain Laboratory, Mainen ZF & Churchland AK (2021) Citric Acid water as an alternative to water restriction for high-yield mouse behavior. eNeuro, 8(1). doi: 10.1523/ENEURO.0230-20.2020

clusterless_decoding

clusterless decoding of neural data using a mixture of Gaussians (MoG)

datajoint-ibl-gitops

DataJoint deployments for IBL's kubernetes cluster. Codebase for IBL Navigator located in: https://github.com/datajoint-company/ibl-navigator.

datajoint-tutorial

DataJoint Tutorial for IBL pipeline

dpca

An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)

ephys-atlas-web

example-notebooks

Example notebooks for the Dandy Hub archive

experimental

friendly_neurons

Community Detection for spike data

hackathon-may-2022

ibl-changepoint

Toolbox for change-point detection and ideal-observer analyses of IBL task data

ibl-neuropixel

Collection of tools to handle Neuropixel 1.0 and 2.0 data

ibl-photometry

A collection of methods and tools for experimental photometry data

ibl-pipeline

DataJoint pipeline for IBL project

ibl-pipeline-light

A light version of IBL pipeline that allows users to access datajoint tables.

ibl-viz

Gallery of visualizations and associated code

ibl-viz-earth

iblalyx

iblapps

pyqt5 dependent applications for IBL sessions

iblatlas

IBL atlas module

iblbpod

iblbrainviewer

IBL API for atlas web