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data-analysis

Data Science Using Python

ddgun

predict stability change upon mutation

deap

Distributed Evolutionary Algorithms in Python

decimer-image-to-smiles

The repository contains the network and the related scripts for encoder-decoder based Chemical Image Recognition

decimer-image_transformer

DECIMER 1.0: Deep Learning for Chemical Image Recognition using Transformers

decimer-java

Deep Learning for Chemical Image Recognition (DECIMER)

deep-active-learning

Deep Active Learning

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deep-proteomics

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepconv-dti

DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences

deepcseqsite

Protein-ligand binding sites prediction toolkits

deepdrug3d

A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.

deepfmpov3d

Implementation of Shape and Electrostatic similarity metric in deepFMPO.

deepfold

Learning structural motif representations for efficient protein structure search

deepfri

Deep functional residue identification

deeplearning-biology

A list of deep learning implementations in biology

deeplearninglifesciences

Example code from the book "Deep Learning for the Life Sciences"

deepneuralnet-qsar

deepsmiles

DeepSMILES - A variant of SMILES for use in machine-learning

deepwalk

DeepWalk - Deep Learning for Graphs

dgraphdta

a novel DTA predition method using graph neural network

discriminativeactivelearning

Code and website for DAL (Discriminative Active Learning) - a new active learning algorithm for neural networks in the batch setting. For the blog:

dmol-book

Deep learning for molecules and materials book

dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

embeddings_reproduction

enrich2

Tool for deep mutational scanning experiments.

enz-pred

enzyhtp

enzyme-datasets

Enzyme datasets used to benchmark enzyme-substrate promiscuity models