Giter Site home page Giter Site logo

Comments (1)

corneliusroemer avatar corneliusroemer commented on August 11, 2024

Later, I got some libomp errors:

/Users/corneliusromer/code/iqtree2/simulator/alisimulator.cpp:1755:71: error: use of undeclared identifier 'omp_get_num_threads'
 1755 |             if ((*it)->node->sequence->num_threads_done_simulation == omp_get_num_threads())
      |                                                                       ^
1 error generated.
gmake[2]: *** [simulator/CMakeFiles/simulator.dir/build.make:76: simulator/CMakeFiles/simulator.dir/alisimulator.cpp.o] Error 1
gmake[2]: *** Waiting for unfinished jobs....
gmake[1]: *** [CMakeFiles/Makefile2:997: simulator/CMakeFiles/simulator.dir/all] Error 2
gmake: *** [Makefile:156: all] Error 2

I fixed them by using this build script with the help of chatgpt:

export CPPFLAGS="-I/opt/homebrew/opt/libomp/include"
export LDFLAGS="-L/opt/homebrew/opt/libomp/lib"
export CMAKE_CXX_FLAGS="-Xpreprocessor -fopenmp -I/opt/homebrew/opt/libomp/include -L/opt/homebrew/opt/libomp/lib -lomp"
export CMAKE_C_FLAGS="-Xpreprocessor -fopenmp -I/opt/homebrew/opt/libomp/include -L/opt/homebrew/opt/libomp/lib -lomp"

cmake .. -DCMAKE_CXX_FLAGS="$CMAKE_CXX_FLAGS" -DCMAKE_C_FLAGS="$CMAKE_C_FLAGS" -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++
make -j

from iqtree2.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.