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License: GNU General Public License v2.0
asdf plugin for the R language
License: GNU General Public License v2.0
Hi,
I am running on High Sierra
and version of asdf
= v0.4.1
when I try to do asdf install R 3.4.3
I get and error like this:
checking for Fortran 77 name-mangling scheme... configure: error: in `/var/folders/74/87lvr3dn181bqfph2vtkc2n40000gn/T/R-3.4.3':
configure: error: cannot compile a simple Fortran program
See `config.log' for more details```
Updated the list-all
code to separate with spaces and not EOL as seen in https://asdf-vm.com/#/plugins-create
#!/usr/bin/env bash
# Start the list at major version 2
major=2
# collect all the versions in this
versions=()
# Act like a do-while loop and iterate though major versions starting a 2 until no minor releases can be found.
# And by no minor release found, no lists found on the webpage with no text like '.tar.gz' on it.
while : ; do
major_list="$(curl --silent https://mirrors.nics.utk.edu/cran/src/base/R-${major}/ | tr '<>' ',,' | awk -F, '/tar.gz/{ print $13 }' | sed -e 's/.tar.gz//g' -e 's/R-//')"
[[ $major_list == '' ]] && break
versions+=($major_list)
major=$(( $major + 1 ))
done
echo ${versions[@]}
This is fixed in PR #15.
Hi,
R v3.6.1 dies with
$ R_CONFIGURE_OPTIONS=--with-x=no --with-PCRE=no asdf install R 3.6.1
...
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... no
checking whether PCRE support suffices... configure: error: pcre >= 8.20 library and headers are required
Despite pcre and pcre-dev 8.31 package are installed:
$ dpkg -l | grep ii | grep pcre
ii libpcre3:amd64 1:8.31-2ubuntu2.3 amd64 Perl 5 Compatible Regular Expression Library - runtime files
ii libpcre3:i386 1:8.31-2ubuntu2.3 i386 Perl 5 Compatible Regular Expression Library - runtime files
ii libpcre3-dev:amd64 1:8.31-2ubuntu2.3 amd64 Perl 5 Compatible Regular Expression Library - development files
ii libpcrecpp0:amd64 1:8.31-2ubuntu2.3 amd64 Perl 5 Compatible Regular Expression Library - C++ runtime files
Cheers.
I was trying to install the "latest" version of R using asdf
. I ran asdf install R latest
and
22:17 $ R --version
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
but the latest version is 4.0.2. I can successfully install that version if I specify it explicitly like asdf install R 4.0.2
, but the list-all
and install R latest
functionality should work as expected. I'm opening a PR momentarily to fix this.
Hi @n8sty, thanks for continuing this work. I was waiting for the update of this plugin.
I haven't used asdf for R yet, so I still have no idea how different R versions handle the installation path of the packages. Could you tell me if it is in the R_CONFIGURE_OPTIONS variable that I inform the installation path of the packages?
My current installed version (4.0.3) uses the R_LIBS_USER variable to indicate a path other than the default for installing packages. How does asdf handle this?
Hello, just a small issue to mention some missing dependencies in the readme in order to install version 3.6.3:
sudo apt install libbz2-dev liblzma-dev libpcre3 libpcre3-dev
operating system:
> $ cat /etc/os-release
NAME="Ubuntu"
VERSION="18.04.5 LTS (Bionic Beaver)"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu 18.04.5 LTS"
Not an expert in this field, but thought mentioning would be worth it. Feel free to close this issue if you find this irrelevant (I've already fixed it on my local setup).
I met this error when install R in macOS 10.15.5
$ asdf install R 3.6.3
configure: error: --with-x=yes (default) and X11 headers/libs are not available
Package translations rely on ls
on makefile https://github.com/wch/r-source/blob/32334706896c2631fdd050c1b807ce4b6e867aea/src/library/translations/Makefile.in#L22 what leads to error when ls
command is configured to have colors:
building package 'translations'
cp: \033[34m./inst/da\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/de\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/en\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/en@quot\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/en_GB\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/es\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/fa\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/fr\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/it\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/ja\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/ko\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/nn\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/pl\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/pt_BR\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/ru\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/tr\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/zh_CN\033[39;49m\033[0m: No such file or directory
cp: \033[34m./inst/zh_TW\033[39;49m\033[0m: No such file or directory
Any tip on how to get rid of those colors just to install R
?
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