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element-lab

DataJoint Element for Lab Management - NIH U24

element-optogenetics

DataJoint Element for optogenetic experiments

element-session

DataJoint Element for Session Management - NIH U24

ibl-pipeline

DataJoint pipeline for IBL project

ibllib

IBL core shared libraries

intanrhdreader

Python reader for .rhd data files

intanrhsreader

Python reader for .rhs data files

iohmm

Input Output Hidden Markov Model (IOHMM) in Python

map-ephys

Mesoscale activity ephys ingest schema

mbeautifier

MBeautifier is a MATLAB source code formatter, beautifier. It can be used directly in the MATLAB Editor and it is configurable.

monkey-dj

firefly-monkey datajoint schema

mysql-docker

Docker image for mysql configured to work with DataJoint

neurocaas

IaC codebase for the NeuroCAAS Platform

neuropixel-utils

Utilities for managing Neuropixel datasets and Kilosort results

nipype

Workflows and interfaces for neuroimaging packages

noisereduce

Noise reduction in python using spectral gating (speech, bioacoustics, audio, time-domain signals)

objectscenerecognition

Analysis toolbox for object and scene recognition memory in PER, POR, and hippocampus

opendevin

🐚 OpenDevin: Code Less, Make More

pandas-ai

Pandas AI is a Python library that integrates generative artificial intelligence capabilities into Pandas, making dataframes conversational

pharus

Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.

probeinterface

Python package to handle probe layout, geometry and wiring to device.

prophet

Tool for producing high quality forecasts for time series data that has multiple seasonality with linear or non-linear growth.

pyfinch

Python package for analyzing avian neural & bioacoustics signals

pynapple

PYthon Neural Analysis Package :pineapple:

pynwb

A Python API for working with Neurodata stored in the NWB Format

qsiprep

Preprocessing and reconstruction of diffusion MRI

rosettasciio

Python library for reading and writing scientific data format

sci-viz

Generic visualization framework for building dashboarding capabilities for DataJoint pipelines.

sciops-dev_sabatini

sleap

A deep learning framework for multi-animal pose tracking.