jairojuunior/brazil_mortality_datasus_processor

This repository contains scripts for preprocessing files on Brazilian mortality by city

Brazil Mortality DataSUS Processor

This repository contains scripts for preprocessing files on Brazilian mortality by city I collected and preprocessed in order to facilitate manipulation by the data community.

High level data pipeline

1. Import files
2. Extract from file header the year of reference
3. Extract the IBGE city code
4. Convert objects to numeric (this dataset contains columns where the decimal separator is period or comma)
5. Rename columns according to ICD10 (please refer to https://icd.codes/icd10cm)
6. Export a CSV at output_mortality/brazil_city_mortality_<year>.csv

How to run it?

Run Dataprep Notebook.ipynb (instruction on notebook).

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NOTE

This data pipeline was tested only with files from 2010 to 2018. It might not work on previous data.

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Where can I see exported data?

I update this data on Kaggle monthly. Get it: https://www.kaggle.com/jairofreitas/brazilian-universal-health-care-data