jakebeal Goto Github PK
Name: Jacob Beal
Type: User
Company: Raytheon BBN Technologies
Location: USA
Blog: http://jakebeal.com
Jacob Beal's Projects
biocompiler
Archival copy of Proto BioCompiler code
biopython
Official git repository for Biopython (originally converted from CVS)
bolls
Spheroid models for the GPU.
cds
The OpenMath Content Dictionaries
dnaweaver_synbiocad
Command-Line version of DNAWeaver
doebase
Basic DoE (Design of Experiments) routines for metabolic pathway design
functional-synbio-eg
An example repository for a functional synthetic biology package
igem-distribution
Repository for collective design of an iGEM DNA distribution
igem-vectors
Package of vectors currently in use at iGEM
jakebeal.github.io
Personal website
lcrgenie
LCRGenie
mit-proto
Spatial computing language & simulator, originally developed at MIT
p2protelis
protelis
Java-hosted execution of Protelis programs
protelis-morphogen
pysbol3
Native python implementation of SBOL 3.0 specification
pysbol3_playground
Playing around with pysbol3
ribosome-binding-site-calculator-v1.0
The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and design synthetic RBS sequences to rationally control the translation initiation rate. It is used to design synthetic biological systems.
salislabcode
Models, design algorithms, and other software related to Salis lab publications
sandbox
Test junk file
sbol-examples
A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.
sbol-specification
sbol-utilities
Command-line utilities and scripts for manipulating SBOL data
sbol3-use-cases
Descriptions, examples, and code showing how SBOL 3 can be applied to various use cases
seed-workshop-2018
Materials for the Software for Synthetic Biology Workflows Workshop
setup-graphviz
▶️ GitHub Action to set up Graphviz cross-platform(Linux, macOS, Windows).
talks-and-tutorials
Talk and tutorial content for website
tasbeflowanalytics
Flow cytometry unit conversion and analytics
tasbeflowanalytics-tutorial
Tutorial for how to use TASBEFlowAnalytics software
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