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Javier Carpinteyro-Ponce's Projects

salmonte icon salmonte

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

teanalysis icon teanalysis

Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.

telocal icon telocal

A package for quantifying transposable elements at a locus level for RNAseq datasets.

tetranscripts icon tetranscripts

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

tutorials icon tutorials

Tutorials on phylogenetic and phylogenomic inference

twisst icon twisst

Topology weighting by iterative sampling of sub-trees

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