jcouto/sbxreader

Reader for Neurolabware scanbox files

sbxreader's Issues

add to_numpy

I think it will be great to add a to_numpy() function:
e.g.
https://pandas.pydata.org/pandas-docs/version/0.25.0/reference/api/pandas.DataFrame.to_numpy.html

loading all data to memory does is not offset corrected

When doing np.array(dat) a view is returned, np.array(dat[:]) return the correct result, but maybe it would be good to change it so that np.array(dat) will also return an offset corrected data

np.array(dat[0])[0][0][0][0],np.array(dat)[0][0][0][0][0]
(21204, 44331)

Thanks

scanbox version

Hi,

In some of the rig setting, the .mat file save scanbox_version using the value sbconfig.firmware, which is the str(4.0) as you can see in the following screenshot:

Thus, when we do the suite2p registration using .sbx, it raises an error coming from https://github.com/jcouto/sbxreader/blob/main/sbxreader/reader.py#L60

Is it possible to change the if statement a bit? for example:

if isinstance(info.scanbox_version, str) or info.scanbox_version < 3:
   um_per_pixel_x = info.calibration[magidx].x
   um_per_pixel_y = info.calibration[magidx].y