The .xml files for the tools presented on the customized Galaxy interface of JCVI's Viral Cloud Resource (VCR). These should replace the default Galaxy .xml before bundling.
GALAXY
======
http://galaxyproject.org/
The latest information about Galaxy is always available via the Galaxy
website above.
HOW TO START
============
Galaxy requires Python 2.5, 2.6 or 2.7. To check your python version, run:
% python -V
Python 2.4.4
Start Galaxy:
% sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:
http://localhost:8080
You may wish to make changes from the default configuration. This can be done
in the universe_wsgi.ini file. Tools are configured in tool_conf.xml. Details
on adding tools can be found on the Galaxy website (linked above).
Not all dependencies are included for the tools provided in the sample
tool_conf.xml. A full list of external dependencies is available at:
http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies