jdkim/projects-2023

BioHackathon MENA 2023 Projects

• Project 1: Toward the treatment of Vaso-Occlusive Crisis: A Reinforcement learning-based approach for non-opioid drug discover

• Project 2: A reproducible workflow using Nextflow for protein Molecular Dynamics (MD) simulations with documentation that supports RTL languages and non-Latin scripts.

• Project 3: Onto-CGANS: Ontology-based synthetic data generation

• Project 4: End to end framework to enable analyzing data from DNA sequencing experiments utilizing AI

• Project 5: DNApredict

• Project 6: Improving prokaryotic genome annotation through an interoperable and multi-platform bioinformatic pipeline.

• Project 7: MetaboliteNET: building a metabolite centric knowledge base by ontology-based mining annotations from literature

• Project 8: Open MENA Microbiome Project

• Project 9: The Middle East molecular database

• Project 10: Reproducing Machine Learning and AI methods using FAIR Workbench

• Project 11: Diabetes Atlas for MENA

• Project 12: Bacteria sensing in wastewater treatment processes using transformer models

• Project 13: Document similarity of articles in the bio-medical domain using multilabel-classification and ontology embeddings.

• Project 14: The ELIXIR::GA4GH Cloud - Global Engagement

• Project 15: Genome workflows and resources for the MENA population

• Project 16: Metadata for Science with (bio)schemas

• Project 17: Creating a FAIR and Harmonized Ontology for Diseases and Phenotypes

• Project 18: Cloud-native data analysis workflow execution service and quality assessment of published workflows

• Project 19: Agile textmining with PubAnnotation/PubDictionaries, and its application to MENA Bioinformatics

• Project 20: mOWL: Python library for machine learning with biomedical ontologies

• Project 21: Harmonizing COVID-19 Epidemiology Ontologies

• Project 22: Predicting the risk of food contamination using machine learning models