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Gregory Jefferis's Projects

mesher icon mesher

Meshing operations on triangular meshes (surface registration, selection, visualizations, etc.)

micromanager12extras icon micromanager12extras

Some code built on top of the micromanager 1.2 tree that improved dc1394 support and added a LabJack driver

mmand icon mmand

Mathematical Morphology in Any Number of Dimensions

morpho icon morpho

R-package providing a toolset for (3D-based) Geometric Morphometrics

n5-utils icon n5-utils

simple standalone BigDataViewer for multiple N5 (or HDF5) datasets

nabor icon nabor

R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions

nat.amira icon nat.amira

Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software

nat.ants icon nat.ants

Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools

nat.as icon nat.as

NAT: Wrapper for informal neuroanatomy AnalysisSuite codebase

neura icon neura

Fork of NeuRA Neural Reconstructions Algorithms

nm-gj icon nm-gj

Neuromatic/NClamp with Greg's personal extensions

nmf icon nmf

NMF: A Flexible R package for Nonnegative Matrix Factorization

osb_vfb_showcase icon osb_vfb_showcase

Showcase of some Drosophila melanogaster neuronal morphologies processed by Virtual Fly Brain.

p1neurons icon p1neurons

Dataset of Drosophila male-specific P1 neurons

paperutils icon paperutils

R package with utility functions to support preparation of journal articles

pic2nifti icon pic2nifti

Simple conversion from Biorad PIC to nifti for use with DTI-TK quicklook plugin

pkgdown icon pkgdown

Generate static html documentation for an R package

plyxsystem icon plyxsystem

A method of using python scripts to manipulate the current document in LyX.

pymaid icon pymaid

Collection of Python 3 tools to work with neuron data from CATMAID servers

qs icon qs

Quick serialization of R objects

r-natverse icon r-natverse

Batteries included docker image for full natverse

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