Can't generate venn diagram with R script

[jacquelinemattos]

Can't generate venn diagram with R script

[jacquelinemattos]

And this is what it's on my "VennDiagram.2024-04-06_07-18-31.log"

INFO [2024-04-06 07:18:32] [[1]]
INFO [2024-04-06 07:18:32] Y[idx]
INFO [2024-04-06 07:18:32]
INFO [2024-04-06 07:18:32] $col
INFO [2024-04-06 07:18:32] colours[idx]
INFO [2024-04-06 07:18:32]
INFO [2024-04-06 07:18:32] $fill
INFO [2024-04-06 07:18:32] colours[idx]
INFO [2024-04-06 07:18:32]
INFO [2024-04-06 07:18:32] $alpha
INFO [2024-04-06 07:18:32] [1] 0.3
INFO [2024-04-06 07:18:32]
INFO [2024-04-06 07:18:32] $filename
INFO [2024-04-06 07:18:32] NULL
INFO [2024-04-06 07:18:32]

[jeffersonfparil]

How many species do you have on your: config/venn_species_max_5.txt?

[jacquelinemattos]

Just four species

[jeffersonfparil]

I'm assuming you have unique species, if that's the case then you may have the same set of genes in both species. I'll try to accommodate for that in the next update.

• To validate this hunch, can you remove one of the species you think is most likely very closely related to another species in your list?

[jacquelinemattos]

For sure, I'll try removing one of them in my next run. Although I think that my four species are not very closely related among each other. Even the two that would be the most, are not too much. But of course, I'll give this a try, and let you know how it went. Thanks so much!