assess_specific_genes.nf fails to open ORTHOGROUPS_SINGLE_GENE.NT.treefile

[Keevai09]

assess_specific_genes.nf fails to open ORTHOGROUPS_SINGLE_GENE.NT.treefile

[jeffersonfparil]

Hi @Keevai09,
Thanks for reporting this issue. I will look into this as this may have been caused by recent changes made to fix the issues of other users. I will start here and probably test another gene just to make sure the error is repeatable across other input genes:

compare_genomes/modules/assess_specific_genes.nf

Line 175 in 96b9c9a

### Run with lambda_i ~ Gamma(alpha), for each of the i_th gene family category (Output: ${GENE}_CAFE_Gamma100_results/)

.

You may do the same if you have the time as I may not have the time at the moment.

[Keevai09]

Okay. Thank you @jeffersonfparil. I will test with another gene just to make sure.