hbvdb_tools's Introduction
PREREQUISITE - Vcftools (http://sourceforge.net/projects/vcftools/) INSTALLATION To install this module, run the following commands: sudo ./install.sh SAMPLE USAGE The sample command to add new variant frequency from the input in vcf format into the database ./bin/bvd-add.pl -d example/sample_DB example/sample_input.vcf The sample command to retrieve the variant frequency ./bin/bvd-get.pl -d example/sample_DB Please note that the database that was used in the above commands, 'example/sample_DB', is for tutorial purpose only. Practically, you can insert variant frequencies into the database by only ./bin/bvd-add.pl your_input.vcf and can retrieve the variant frequency by only ./bin/bvd-get.pl SUPPORT AND DOCUMENTATION After installing, you can find more information about this these tools in hbvdb-tools.pdf and you can find the library documentation at for this module by using perldoc command. perldoc Bvdb LICENSE AND COPYRIGHT Copyright (C) 2012 Jessada Thutkawkorapin This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License. See http://dev.perl.org/licenses/ for more information.
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