Giter Site home page Giter Site logo

ji-jinlong / ciriquant Goto Github PK

View Code? Open in Web Editor NEW

This project forked from bioinfo-biols/ciriquant

0.0 0.0 0.0 366 KB

circular RNA quantification tools

Home Page: https://sourceforge.net/projects/ciri/files/CIRIquant

License: MIT License

Shell 0.11% Python 46.49% Perl 51.31% R 1.88% Makefile 0.21%

ciriquant's Introduction

CIRIquant

Build Status GitHub release (latest by date) The MIT License GitHub All Releases SourceForge Documentation Status

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

Documentation

Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest/

Author

Authors: Jinyang Zhang([email protected]), Fangqing Zhao([email protected])

Maintainer: Jinyang Zhang

Release Notes

  • Version 1.1: Added support for stranded library and GFF3 format input.
  • Version 1.0: The first released version of CIRIquant.

License

The code is released under the MIT License. See the LICENSE file for more detail.

Citing CIRIquant

  • Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9

ciriquant's People

Contributors

kevinzjy avatar barrydigby avatar dependabot[bot] avatar osagiei avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.