Comments (4)
Your Protocol_Translator.json file looks fine and I'm not reproducing the error with my installation. Could you post the first line of output from dcm2niix - it might be a versioning issue? Mine reads Chris Rorden's dcm2niiX version v1.0.20170624 Clang8.1.0 (64-bit MacOS)
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We reproduced some protocol translator problems when using older versions of dcm2niix (2016-era) with later versions of dcm2bids.py. Let me know if updating to the latest bidskit (0.9.4) and dcm2niix version (14-July-2017, bundled with MRIcroGL) fixes this issue. Mac, Windows and Linux precompiled versions are here
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Awesome! Let us know if you have further issues or feature requests.
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Related Issues (20)
- BIDS validation error for fieldmaps after conversion HOT 16
- default readme in BIDS dataset after conversion HOT 3
- Second pass error HOT 6
- 'SerDesc' key error HOT 4
- .bval and .bvec export depends on dwi filename HOT 2
- Second pass error : KeyError: 'ScanningSequence' HOT 3
- Read-the-Docs page is an empty stub
- Not anonymizing HOT 1
- Second pass issue HOT 1
- Error when using --no-sessions option and only one subject is converted HOT 2
- Question about data structuring prior to running BIDSKIT
- Acquisition suffix is duplicated when multiple runs HOT 5
- IntendedFor fields with incorrect slash when running in Windows
- Cannot debug bidskit
- Cannot convert Tilted CT Scan
- session flag
- Files are overwritten on the second pass HOT 1
- Unable to run bidskit - "TypeError: Expected maxsize to be an integer or None" HOT 3
- Unclear specifications/ lack of examples of "Protocol_Translator.json" file
- Blip up/down for multi-echo
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