clarification on sourcedata requirements

[jmtyszka]

clarification on sourcedata requirements

[jmtyszka]

You're also correct that sessions are optional in the BIDS specification. bidskit assumes sessions by default, but can run without session handling using the --no-sessions flag.

[jmtyszka]

Bidskit should be able to handle "-" and "_" following the resolution of Issue #61. Let me check what's happening with the docker container (I'm assuming you're using Docker to run bidskit based on your other comments). One possible workaround (I haven't tested this) would be to place all the series directories (fieldmap_BOLD_1, etc) within a dummy session directory called "1". The underscore check only applies to the subject and session names, not the series names. The final subject data structure would then be sub-027/ses-1/... and filenames would include "ses-1".

[dmd]

I was not able to get the Docker version to work at all -- the above is using the pip install version.

[dmd]

Oh - I am not using sessions. I was under the impression that sessions are optional.

[jmtyszka]

The pip version is still at 1.2.3. Will try to get that updated today. Are you able to install bidskit using setup.py in your environment?

[dmd]

Yeah. It's just the Docker version that fails.

[jmtyszka]

The PyPi version has been updated to 2019.8.16 - let me know if that works out of the box. I'll be looking at the Docker issues today.

[dmd]

Ok, apparently --no-sessions is all I needed for this one.