jonathanbieler / biomart.jl Goto Github PK
View Code? Open in Web Editor NEWMake simple requests to Ensembl BioMart database.
License: MIT License
Make simple requests to Ensembl BioMart database.
License: MIT License
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Thanks for this work. I was wondering if it's possible to access a list of attributes available for a given dataset. For instance,
BioMart.Dataset("hsapiens_gene_ensembl") |> list.attributes
> ["ensembl_gene_id", "go_id", ...]
What do you think?
Hi,
With the new versions of Julia, you need to do the following modification in the Query.jl file
(It specifies that the file is read into a DataFrame)
function execute(q::Query)
query = HTTP.URIs.escapeuri(string(q.xdoc))
r = HTTP.get(string(BIOMART_URL, "?query=", query))
CSV.read(r.body, DataFrames.DataFrame, delim = '\t')
end
great package, by the way.
Irene
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