Comments (2)
jorvis
commented on July 16, 2024
Some of the parsing libraries have issues with misordered GFF. That is, where features like a CDS appear which reference an mRNA parent, but in which that parent has not been seen yet in the file. Fortunately, this has come up before and there's a script which attempts to correct for it. Could you try running your input through the gff/correct_gff_feature_order.pl script and then use that output to try again?
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jorvis
commented on July 16, 2024
Closing this, assuming that fixed the issue. If not, please re-open and post example input file.
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Related Issues (20)
- NameError: name 'utils' is not defined HOT 13
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- Syntax error on gff.py HOT 4
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- Conda based install HOT 2
- convert_gff3_to_ncbi_tbl.py HOT 2
- convert_gff_to_ncbi_tbl.py HOT 3
- Incorrect parent features from convert_tRNAScanSE_to_gff3.pl HOT 2
- Formatting Issue? HOT 2
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