This repository contains the code for reproducing the simulation results of the paper Camacho J, Vitale R, Morales-Jimenez D and Gómez-Llorente C. Variable-Selection ANOVA Simultaneous Component Analysis. Submitted to Bioinformatics. 2022
This repository requires the MEDA toolbox v1.3 at https://github.com/josecamachop/MEDA-Toolbox/tree/v1.3
Contact person: José Camacho ([email protected])
Last modification of this document: 3/Nov/22
The code is organized in a number of Matlab scripts:
- The scripts named "RunExample#" perform the complete computation of the corresponding simulated example in the paper.
- The script named "RunWheat" performs the motivating example with ASCA.
The present repository is organized as follows:
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README.md This document.
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RunExample1.m Contains the code for the example with non-significant relationships.
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RunExample1b.m Contains the code for the example with non-significant relationships in two factors with several levels.
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RunExample2.m Contains the code for the example with significant one-to-one relationships.
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RunExample2b.m Contains the code for the example with significant one-to-one relationships and a small bias.
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RunExample3.m Contains the code for the example with a multivariate relationship.
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RunExample4.m Contains the code for the example with a multivariate relationship in two factors with several levels.
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RunWheat.m Contains the code for the ASCA motivating example.
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html/ Contains the web reports obtained with command "publish".
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Fig/ Contains the figures of the paper.
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example1.mat Contains the workspace after the computation of Example 1 for simuleMV as the simulation engine.
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example1_randn.mat Contains the workspace after the computation of Example 1 for randn as the simulation engine.
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example1b.mat Contains the workspace after the computation of Example 1b.
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example2.mat Contains the workspace after the computation of Example 2.
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example2b.mat Contains the workspace after the computation of Example 2b.
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example3.mat Contains the workspace after the computation of Example 3.
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example4.mat Contains the workspace after the computation of Example 4.
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example5.mat Contains the workspace after the computation of Example 5.
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wheat Contains the wheat data.
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parglm_genes Contains our interpretation of the code of ASCA-genes.